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Report for CCDS18240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18240.1 Public Mus musculus 4 Wdr31 23 108 98 CCDS HistoryNCBI Gene:71354Re-query CCDS DB by CCDS ID:18240.1Re-query CCDS DB by GeneID:71354See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030087.13 ENSMUSP00000030087.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030087.13Link to Ensembl Protein Viewer:ENSMUSP00000030087.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030087Re-query CCDS DB by Protein ID:ENSMUSP00000030087
Original member Current member EBI ENSMUST00000120095.7 ENSMUSP00000112719.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120095.7Link to Ensembl Protein Viewer:ENSMUSP00000112719.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120095Re-query CCDS DB by Protein ID:ENSMUSP00000112719
Original member Current member NCBI NM_001290521.2 NP_001277450.1 Accepted alive Link to Nucleotide Sequence:NM_001290521.2Link to Protein Sequence:NP_001277450.1Re-query CCDS DB by Nucleotide ID:NM_001290521Re-query CCDS DB by Protein ID:NP_001277450Link to BLAST:NP_001277450.1
Original member Current member NCBI NM_023597.3 NP_076086.1 Accepted alive Link to Nucleotide Sequence:NM_023597.3Link to Protein Sequence:NP_076086.1Re-query CCDS DB by Nucleotide ID:NM_023597Re-query CCDS DB by Protein ID:NP_076086Link to BLAST:NP_076086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277450.1 367 Q9JHB4-1 367 100% 0 0
NP_076086.1 367 Q9JHB4-1 367 100% 0 0

Chromosomal Locations for CCDS 18240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62453777 62453937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62455811 62455973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62457440 62457581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62458816 62458883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62460322 62460422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62460520 62460664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62462141 62462215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62463344 62463476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62463927 62464042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTTGTTACTTGACGGCCAACTGAAACCAGCTCTTCCTCAGAAGGTCTTCTGTAGACTCTGGGCTGTGA
TGGGAAAACTGCAGAGCAAACTCAGACACAGCACTTACTTATACAGCAGGCCTGATGGAATTATAGAAGA
GAGAGTCCAGACTAAAGCTCCCCAAGAATACATCCCTGTTCACGTGGATACCGTCTCTGTGATTGCCACT
CTGAACTCAGACCTTTGTATCTCTGGAGGAAAAGACAAGACCGCCGTGGCCTACAATTGGAAAACTGGGC
GTATGGTGAAAAGGTTCACAGGGCACGAGCGGGAAATCACGAAGATAGCCTGTATTCCCAAAGCAAACCA
GTTCTTCAGCGCCTCTCGAGACAAGACAGTCCTGATGTGGGATCTGCAGGGCTCCTCGCACCCTAGGCAG
CAGCTGTCTGGCCATGCCATGGTGGTCACTGGCTTGGCTGTGAGCCCAGACTCGTCCCAGCTGTGCACTG
GCTCTCGGGACAATAGCCTGCTTCTGTGGGATGTGGGGACCGGACAGTGTGTGGAGAGAGCGTCTGTCTC
CAGGAACCTGGTCACACACCTGTGCTGGGTCCCGAGTGAGCCATACATAGTCCAGACCTCTGAGGATAAG
ACCATCAGATTATGGGACAGTCGGGGGCTTCAGATGGCTCACATGTTTCCCACAAAACAGCATATCCAGA
CCCATTGTGAAGTCAGCGTGGATGGACACACGTGTATTTCCTGCAGCAGTGGCTTTGGGGGTGAAGGCTG
TGAAGCCACGTTGTGGGACCTAAGACAGACTAGAGACAGAATGTGTGAGTATAAGGGGCATTTCCAGACA
GTTGCATCCTGTGTCTTTCTACCGAAGTCCACGGCCTTGATGCCTATGATTGCTACCTCTGCACATGACT
CCAAGGTGAAGATTTGGAACCAGGATACTGGAGCTTGCCTCTCCACCTTGTCTCTGGATGGATCAGGACC
CCTGACCTCACTGGCTGTTGGTGACATCTCCTCCTTGTTATGCGCAAGTTTCTACAGAGGAGTTCACTTA
CTCAGAGTGGACCACAGCCAAGGACTGGAACTGCAGGAAGTGGCAGCCTTCTAA

Translation (367 aa):
MLLLDGQLKPALPQKVFCRLWAVMGKLQSKLRHSTYLYSRPDGIIEERVQTKAPQEYIPVHVDTVSVIAT
LNSDLCISGGKDKTAVAYNWKTGRMVKRFTGHEREITKIACIPKANQFFSASRDKTVLMWDLQGSSHPRQ
QLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDVGTGQCVERASVSRNLVTHLCWVPSEPYIVQTSEDK
TIRLWDSRGLQMAHMFPTKQHIQTHCEVSVDGHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQT
VASCVFLPKSTALMPMIATSAHDSKVKIWNQDTGACLSTLSLDGSGPLTSLAVGDISSLLCASFYRGVHL
LRVDHSQGLELQEVAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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