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Report for CCDS38406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38406.1 Public Mus musculus 3 Lrriq4 23 108 98 CCDS HistoryNCBI Gene:68307Re-query CCDS DB by CCDS ID:38406.1Re-query CCDS DB by GeneID:68307See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108267.7 ENSMUSP00000103902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108267.7Link to Ensembl Protein Viewer:ENSMUSP00000103902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108267Re-query CCDS DB by Protein ID:ENSMUSP00000103902
Original member Current member EBI ENSMUST00000172350.7 ENSMUSP00000127052.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172350.7Link to Ensembl Protein Viewer:ENSMUSP00000127052.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172350Re-query CCDS DB by Protein ID:ENSMUSP00000127052
Original member NCBI NM_026668.2 NP_080944.2 Updated not alive Link to Nucleotide Sequence:NM_026668.2Link to Protein Sequence:NP_080944.2Re-query CCDS DB by Nucleotide ID:NM_026668Re-query CCDS DB by Protein ID:NP_080944
Current member NCBI NM_026668.3 NP_080944.2 Accepted alive Link to Nucleotide Sequence:NM_026668.3Link to Protein Sequence:NP_080944.2Re-query CCDS DB by Nucleotide ID:NM_026668Re-query CCDS DB by Protein ID:NP_080944Link to BLAST:NP_080944.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080944.2 596 A6H6A4-1 596 100% 0 0

Chromosomal Locations for CCDS 38406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30645330 30645348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30646253 30646313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30649905 30650952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30655637 30655810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30659054 30659192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30659901 30660097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30672141 30672293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGCATCATTCATCATCAGGGTCTCGCTGTGTTCTTCAGAATGGCCTTGAACTCACAGTCATCCTTCCCC
GGCTACACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATTT
ACCCAAGGTTCTTCAGAAAAAAGAACCCCACCAGCTCACTGATAGAACATTTTTCATTGATGGTTCCAAC
CAGGGGTTGAAGACCATCCCGTCAGAGATTTTGGCATTAAAAGAATTAGAAGAAGTGCATCTGGAGAATA
ACCAGATTGCAGAAATTCCCCAGGGCATTCAGCAGTTACAGAACACCAAGGTTCTCTACCTGCATAACAA
CAGCCTGCAAGATCTGTGCCCGGAGCTGGGGGCGCTGAGCAGCCTGGAGTCGCTGGACCTGAGCGGCAAC
CCGCTGGTCATCTCCTCGCTGCACGTCGTCAGCCGCCTCCGCACCCTTCGCGAGCTGCGGCTCTACCGCA
CTGGCCTGACCGAGATTCCCACCGGCATTTGCAAATCCCTGCATCACCTGGAGCTGTTCGGTCTGTCAGA
GAACTTCCTGGAATCGCTGCCCGAGGAAATCGTGAACCAAACCAAGCTCAGGGAGATCTACCTGAAGCAG
AATCACTTCGAGGTTTTCCCTTGCGACCTCTGTGTCCTCTACAACCTGGAGGTGATCGACCTGGACGAAA
ACAAGCTGAAGAGCATCCCCGGAGATATCGGGCACCTGGTGAGGCTGCAGAAGTTCTACGTGGCGTCTAA
CCACCTGATGAGTTTACCGGAGTCTCTGAGTCAGTGCAGCAAGCTGTCAGTGCTGGATTTGACCCACAAC
TCTATCCACTCCCTGCCGTCCTCCCTGGAGCTTCTCACCGAGCTCACGGAGGTAGGGCTGAGCGGGAACC
GGCTGGAGAAGGTGCCGCGCCTCCTCTGCAGCTGGGTGTCGCTGCATCTGCTGTACCTGCGCAACACCAG
CCTGCACGGGCTGCGGGACTCCTTCAAGCGCCTGATCAACCTGCGCTTCCTGGACCTCAGTCAGAACCAC
ATAGAACACTTTCCCGTGCAGATTTGCGCGCTCAAGAACCTGGAGATCCTGGCGCTAGATGATAACAAAG
TGAGGCAGTTACCACCGAGCATAAGCTTGCTTTCAAACCTGAAGATACTCGGGCTCACAGGAAATGACCT
TTTGTCCTTCCCAGAGGAAATCTTTTCCTTAATATCTCTGGAGAAATTATATATTGGACAAGACCAGGGG
TCCAAGCTTTCATCTTTGCCAGAAAACATCAAGAGATTGATGAATCTTAAGGAACTATACATAGAGAACA
ACCGACTGGAACAGCTGCCAGCATCCTTGGGGTTAATGCCAAATCTGGAAGTTCTTGACTGTCGGCATAA
TCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGAGAGCTGCTGCTGGAAGACAAC
TTACTCTGCTGCCTCCCAGAGAACCTTGATCACCTGGTAAATCTTAAGGTCCTAACACTGATGAACAACC
CCATGGTCGACCCTCCCATATATGTGTGTAACCAAGGCAATGAAGCCATATGGAAACACCTGAAGGAGAA
CAGAATTAGGAAAATGATGGCCACCACGATTCAGGCATGGTGGCGTGGAATCATGGTCCGGAAAGGATAT
GGATCTTATGAAGAGCTACTAAAAGCCCGAAAAAAAGGAAAATCCCCTCCAAAGGACAAGAAAGGGAAAA
AGGCTGCAAAGGGGAAGCCTGAAAAAGGGAATAAAAAGTAA

Translation (596 aa):
MHHSSSGSRCVLQNGLELTVILPRLHRFDIIDTFKTLTKELLRQEHLPKVLQKKEPHQLTDRTFFIDGSN
QGLKTIPSEILALKELEEVHLENNQIAEIPQGIQQLQNTKVLYLHNNSLQDLCPELGALSSLESLDLSGN
PLVISSLHVVSRLRTLRELRLYRTGLTEIPTGICKSLHHLELFGLSENFLESLPEEIVNQTKLREIYLKQ
NHFEVFPCDLCVLYNLEVIDLDENKLKSIPGDIGHLVRLQKFYVASNHLMSLPESLSQCSKLSVLDLTHN
SIHSLPSSLELLTELTEVGLSGNRLEKVPRLLCSWVSLHLLYLRNTSLHGLRDSFKRLINLRFLDLSQNH
IEHFPVQICALKNLEILALDDNKVRQLPPSISLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYIGQDQG
SKLSSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEVLDCRHNLLKQLPDAICRTRNLRELLLEDN
LLCCLPENLDHLVNLKVLTLMNNPMVDPPIYVCNQGNEAIWKHLKENRIRKMMATTIQAWWRGIMVRKGY
GSYEELLKARKKGKSPPKDKKGKKAAKGKPEKGNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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