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Report for CCDS36099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36099.1 Public Mus musculus 11 Nefh 23 108 98 CCDS HistoryNCBI Gene:380684Re-query CCDS DB by CCDS ID:36099.1Re-query CCDS DB by GeneID:380684See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093369.4 ENSMUSP00000091061.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093369.4Link to Ensembl Protein Viewer:ENSMUSP00000091061.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093369Re-query CCDS DB by Protein ID:ENSMUSP00000091061
Original member Current member NCBI NM_010904.3 NP_035034.2 Accepted alive Link to Nucleotide Sequence:NM_010904.3Link to Protein Sequence:NP_035034.2Re-query CCDS DB by Nucleotide ID:NM_010904Re-query CCDS DB by Protein ID:NP_035034Link to BLAST:NP_035034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035034.2 1090 P19246 1090 100% 0 0

Chromosomal Locations for CCDS 36099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4939345 4941415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4943851 4943975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4945111 4945310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4947058 4947934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGATGAGCTTCGGCAGCGCCGATGCGCTGCTGGGCGCCCCGTTCGCGCCGCTGCACGGAGGCGGCAGCC
TGCACTACTCGCTGAGCCGCAAGGCAGGCCCGGGCGGCACGCGCTCCGCGGCCGGCTCCTCCAGCGGCTT
CCACTCGTGGGCGCGGACGTCCGTGAGCTCCGTGTCCGCCTCACCCAGCCGCTTCCGCGGCGCCGCCTCG
AGCACCGACTCGCTAGACACCCTAAGCAACGGCCCAGAGGGCTGCGTGGTGGCGGCGGTGGCGGCGCGCA
GCGAGAAGGAGCAGCTGCAGGCTCTGAACGACCGCTTCGCGGGCTACATCGACAAGGTGAGGCAGCTCGA
GGCGCACAACCGCAGCCTGGAGGGCGAGGCGGCGGCGCTGCGGCAGCAGCAAGCCGGCCGCGCCGCCATG
GGCGAGCTGTACGAGCGCGAGGTGCGCGAGATGCGCGGCGCCGTGCTGCGCCTCGGGGCGGCGCGCGGGC
AGCTGCGCCTGGAGCAGGAGCACCTGCTGGAGGACATCGCTCACGTCCGCCAGCGGCTGGACGAGGAGGC
CCGGCAGCGTGAGGAGGCGGAGGCGGCGGCGCGCGCCCTGGCGCGCTTCGCGCAGGAGGCGGAAGCGGCG
CGCGTGGAGCTGCAGAAGAAGGCGCAGGCGCTGCAGGAGGAGTGCGGCTACCTGCGGCGCCACCACCAGG
AGGAGGTGGGCGAGCTGCTCGGTCAGATCCAGGGCTGCGGGGCCGCGCAGGCGCAGGCTCAGGCCGAGGC
TCGCGACGCCCTCAAGTGCGACGTGACGTCGGCGCTGCGGGAGATCCGCGCGCAGCTCGAAGGCCACGCG
GTGCAGAGCACGCTGCAGTCCGAGGAGTGGTTCCGAGTGAGGTTGGACCGACTCTCAGAGGCAGCCAAAG
TGAACACAGATGCTATGCGCTCGGCCCAAGAGGAGATAACTGAGTACCGGCGGCAGCTGCAAGCCAGGAC
CACAGAGTTGGAGGCCCTGAAAAGCACCAAGGAGTCACTGGAGAGGCAGCGCTCTGAGCTAGAGGACCGT
CATCAGGCAGACATTGCCTCCTACCAGGACGCTATTCAGCAGCTGGACAGTGAGCTGAGAAACACCAAGT
GGGAGATGGCTGCACAGCTCCGAGAGTACCAGGACCTGCTCAACGTCAAGATGGCCCTGGACATTGAGAT
TGCCGCTTACAGAAAGCTCCTGGAAGGCGAAGAGTGTCGGATTGGCTTTGGTCCGAGTCCCTTCTCTCTT
ACTGAAGGACTCCCAAAAATTCCCTCCATATCCACGCACATAAAAGTCAAAAGCGAAGAGATGATAAAGG
TAGTAGAGAAATCCGAGAAGGAAACTGTGATTGTAGAAGGACAGACAGAAGAGATCCGGGTGACGGAAGG
AGTGACAGAAGAGGAGGACAAAGAGGCCCAAGGTCAGGAAGGAGAAGAAGCAGAAGAGGGAGAAGAAAAA
GAAGAAGAGGAAGGAGCAGCAGCTACATCTCCCCCTGCAGAAGAGGCTGCATCTCCAGAAAAAGAAACCA
AGTCTCGTGTGAAAGAAGAGGCCAAGTCCCCAGGTGAGGCCAAGTCCCCAGGTGAGGCCAAGTCCCCAGC
TGAGGCCAAGTCCCCAGGTGAGGCCAAGTCCCCAGGTGAGGCCAAGTCCCCAGGTGAGGCCAAGTCTCCA
GCTGAGCCCAAGTCTCCAGCTGAGCCCAAGTCTCCAGCTGAGGCCAAGTCACCAGCTGAGCCCAAGTCTC
CAGCTACAGTGAAGTCTCCAGGTGAGGCCAAGTCACCATCTGAGGCCAAATCTCCAGCTGAAGCCAAATC
TCCAGCTGAGGCCAAATCTCCAGCTGAGGCCAAATCTCCAGCTGAGGCCAAGTCACCAGCTGAAGCCAAG
TCACCAGCTGAAGCCAAATCTCCAGCTACAGTGAAGTCTCCAGGTGAGGCCAAGTCACCATCTGAGGCCA
AATCTCCAGCTGAAGCCAAATCTCCAGCTGAGGCCAAATCTCCAGCTGAGGCCAAATCTCCAGCTGAGGT
CAAGTCACCAGGTGAGGCCAAGTCTCCAGCTGAGCCCAAGTCACCAGCTGAGGCCAAATCTCCAGCTGAG
GTCAAGTCACCAGCTGAGGCCAAATCTCCAGCTGAGGTCAAGTCCCCAGGTGAGGCCAAGTCTCCAGCTG
CAGTGAAGTCACCAGCTGAGGCCAAGTCTCCAGCTGCAGTCAAGTCCCCAGGTGAGGCCAAGTCCCCAGG
TGAGGCCAAGTCACCAGCTGAGGCCAAATCTCCAGCTGAGGCCAAGTCACCAATTGAGGTAAAATCTCCA
GAGAAGGCCAAGACCCCCGTCAAGGAAGGAGCAAAATCTCCAGCTGAGGCCAAGTCTCCTGAGAAGGCCA
AGTCCCCCGTGAAGGAAGATATCAAGCCCCCAGCTGAGGCGAAATCCCCTGAGAAGGCCAAGAGCCCCGT
GAAGGAAGGAGCAAAGCCTCCTGAGAAGGCCAAGCCTCTAGATGTGAAGTCTCCGGAAGCCCAGACTCCA
GTACAGGAGGAAGCGAAGCACCCCACAGACATCAGACCCCCTGAGCAGGTGAAAAGTCCTGCCAAGGAGA
AGGCCAAGTCCCCTGAGAAGGAAGAAGCCAAGACTTCTGAAAAGGTGGCTCCCAAGAAGGAAGAGGTGAA
GTCCCCTGTGAAGGAGGAGGTAAAAGCCAAAGAACCCCCAAAGAAGGTAGAAGAAGAGAAGACACTGCCT
ACACCAAAGACAGAGGCGAAGGAGAGTAAGAAAGACGAAGCTCCCAAGGAGGCCCCGAAGCCCAAGGTGG
AGGAGAAGAAGGAAACTCCCACGGAAAAGCCCAAGGACTCTACAGCAGAAGCCAAGAAGGAAGAGGCTGG
AGAGAAGAAGAAAGCCGTGGCCTCAGAGGAGGAGACTCCTGCCAAGTTGGGTGTGAAGGAAGAAGCTAAA
CCCAAAGAGAAGACAGAGACAACCAAGACAGAAGCAGAAGACACCAAGGCCAAAGAACCTAGCAAACCCA
CAGAGACGGAAAAGCCAAAGAAAGAGGAGATGCCAGCGGCACCAGAGAAGAAAGACACCAAGGAGGAGAA
GACCACAGAGTCCAGGAAGCCTGAGGAGAAGCCCAAAATGGAGGCCAAGGTCAAGGAGGATGACAAGAGC
CTTTCCAAAGAGCCTAGCAAACCCAAGACAGAAAAGGCTGAAAAATCCTCTAGCACAGACCAGAAAGAAA
GCCAGCCCCCAGAGAAGACCACAGAGGACAAGGCCACCAAGGGAGAGAAGTAA

Translation (1090 aa):
MMSFGSADALLGAPFAPLHGGGSLHYSLSRKAGPGGTRSAAGSSSGFHSWARTSVSSVSASPSRFRGAAS
STDSLDTLSNGPEGCVVAAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAM
GELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAA
RVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEARDALKCDVTSALREIRAQLEGHA
VQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDR
HQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSL
TEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEK
EEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP
AEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK
SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE
VKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP
EKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTP
VQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLP
TPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAK
PKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKS
LSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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