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Report for CCDS39188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39188.1 Public Mus musculus 5 Aff1 23 108 98 CCDS HistoryNCBI Gene:17355Re-query CCDS DB by CCDS ID:39188.1Re-query CCDS DB by GeneID:17355See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054979.9 ENSMUSP00000059744.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054979.9Link to Ensembl Protein Viewer:ENSMUSP00000059744.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054979Re-query CCDS DB by Protein ID:ENSMUSP00000059744
Original member NCBI NM_133919.4 NP_598680.3 Updated not alive Link to Nucleotide Sequence:NM_133919.4Link to Protein Sequence:NP_598680.3Re-query CCDS DB by Nucleotide ID:NM_133919Re-query CCDS DB by Protein ID:NP_598680
Current member NCBI NM_133919.5 NP_598680.3 Accepted alive Link to Nucleotide Sequence:NM_133919.5Link to Protein Sequence:NP_598680.3Re-query CCDS DB by Nucleotide ID:NM_133919Re-query CCDS DB by Protein ID:NP_598680Link to BLAST:NP_598680.3

Chromosomal Locations for CCDS 39188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103754329 103754345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103783124 103783244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103783656 103784513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103811063 103811107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103814982 103815068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103816213 103816249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103818935 103818986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103825980 103826034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103826143 103826180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103828348 103828510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103833470 103834459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103841056 103841153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103842227 103842467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103842988 103843088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103843208 103843268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103846234 103846367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103847036 103847107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103847714 103847851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103849350 103849576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103850702 103850823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3657 nt):
ATGGCAGCCCATTCCAGCTTGTACAATGAAGATAGAAACCTGCTTCGAATCAGAGAGAAGGAAAGACGCA
ACCAAGAAGCTCACCAGGAGAAGGAGGCATTTCCCGAGAAGGCTCCCCTGTTTCCAGAGCCTTACAAGAC
TGCAAAAGGCGATGAGCTATCAAGTCGGATCCAGACCATGCTGGGTGACTATGAGGAGATGAAGGAGTTC
CTGAGCAGCAAGTCCCACCCCCACCGCCTGGATGGCTCTGAAGACAGGCCCGGGAAGCCCAGATATCCCT
TAGGTCATGACAGGGGGAACGGGGCTGCATCCAGCTCCCTCCGCACACATGTCTACCACCAGCCTATCCA
CACTTCTGCTCCCGGATCACGTCCTGTCGGTAACATTAGCCACAGTCCAAAGATGGCACAGCCAAGGATG
GAGCCAAGTCTCCACACCAAAATCTATGATGGCCCACGTCTGACTCAAGACCACCTCAGTCAGGGACATT
GTTCCAGAAAGTGTGACCGAAGAGCTGAAGGAGACTCTGCTCCCGAGAGGAAGCTCTCGCCCTTGATCTC
CTCTTTGCCATCCCCGGTGCCCCCTCTATCACCTGTACATTCCAGGCTGCAGGGAACCAGCAAGGCTCAC
AGCAGTGGCGTTAGCAGTAAAAGCTGCTGTGTGGCCAAGTCTTCCAAGGACTTGGTGGCGAAGGCCCAAG
ATAAAGAGACTCCTCATGACGGTTTGGTGGCAGTTACCAGCCTTGGATCAGCCCCTCCTCAGCCACCTTG
CCAGACATTTCCACCCCCTCCTCTCCCCTCAAAAAGTGCTGCAATGCAGCAGAAGCCCACGGCATATGTC
CGTCCCATGGACGGTCAGGATCAGGCTCCCAGTGAGTCCCCCGAGCTGAAGCTGCCACTGGAGGACTATG
GTCAGCAAAGCTTTGAGAAACCAGACCTTAAAGTGCCTGCCAAAGCCAAGCTCACCAGACTAAGGATGCC
CTCTCAGTCGGTGGAGCAGCCGTACTCCAATGAAGTCCATTGCGTTGAAGAGATTCTGAAGGAAATGACC
CACTCGTGGCCACCGCCTCTGACAGCCATACACACACCCAGTACAGCCGAGCCGTCCAGATTTCCTTTCC
CCACAAAGGACCCTCTGCACGTCAGTCCTGCAACCCAGAGCCAAAAACAATATGACACGCCTTCAAAAAC
CCACCCCAATCCCCAGCAAGGAACCTCCATGCTGGAGGACGACCTGCAGCTCAGCGACAGTGAAGACAGC
GACACGGAGCAAGCCACAGAGAAGCCTCCATCCCCACCTGCACCTCCCAGCGCTCCGCAGACACTTCCCG
AGCCCGTGGCCTCAGCACATTCCAGTAGTGGGGAGTCAGAGAGCAGCGAGTCAGACAGTTCCTCAGACTC
TGAGAGTGAGAGCAGCTCCAGCGACAGCGAGGAGGAGGAAGAGAACGAGCCCCTGGAGACCCGGGCTCCC
GAGCCCGAGCCTCCGACGACAAACAAATGGCAGCTGGACAACTGGTTGACCAAAGTCAACCAACCCTCAG
TGCCCCTGGATGGCCGGGGGAGCACAGAGTCTCCACAATGGCGCCAGGAAAGTAAGGGTGTCGCTGAGGG
CAGCAGTGACCAGCAGCATCCTGATTCCAAAGACCCTCTCCCAAAGAGCTCCAGCAAGACTCTCCGGGGT
CCCTCTGAGGGGCCCCAGCCTGGGAAGAGGGGCTGTCCGAAATCCCCCGCTCAACAGGAACCCCCACCTC
GGCAAACCGTGGGCAGCAAACAACCCAGGAAACCCGCCAAGGGCTCCGGCCAGGCAGAGCCCCAGGCCAG
CTCGCAGGCAGAGAGTGAAGTAGGACCCCTTCCCTACGGCTCAAAGGAGCAGACTTCCAAAGACAGACCC
AAGGTGAAGACGAAAGGCAGGCCGCGTGCCGTGGGCAGTCGGGAGCCTAAGCCAGAGGTCCCTGCGCCCA
CGCCTCAGGCAGCCGTGCCCAGACCGAAGCCGCCTGTGCCCACCCCCAGTGAGAAGAGGAAGCACAAGAG
CTCCACGGCCCCCTCCAAGGCGCCCTCAGCCCCCCAGCCTCCGAAGGACAGTGCTGGGGACAGGAACCCA
GAACACTCTGCTCTTGTCTCCTTGACTCAGAGCCAGGGTCCATCCCACAGCAGCAGGGGCAGCAGTGGCA
GCGTCAGGACTAGTGGCTGCCGACAGGCTGTGATTGCCCAAGGGGACGGCTGTAAAGACAAGCTCCTGTT
GCCTTTGAGAGACACCAAATTGCTCTCGCCGCTCAGGGACTCCCCACCACCGACAAGCTTGGTGGTGAAG
ATAACCCTAGACCTCCTCACGAGGATTCCCCAGCCTCTGGGGAAGGGGAGCCGCCCCAGGAAAGCAGAAG
ACAAGCAGCTGTCAGCAGGGAAGAAGCAGGACTCGGAGACCAAGAGCTGTGACAGCTCCAGCAGAGTGAC
CAAGAAGAGAAAGGGTGACCCAGAAAAAGAGCACAGTAACAAGAGACACAAACTGGATAAGTCGCAGACT
GCGTCATCTTCATCTTCCCATACAGAATCTTCCAGAACAAAAGCGCCCAGGTCCTCCTCAGAGAACTCAA
GAAAGGAAATGCTGCCTCCAGCATCGGCGTCCTCAGTCTCCTCTTCCTCATCCTCCCAGAAGCCAAGCAG
ACCTGCACAGAAGAGGCCAAGGCCAGACGAAGACACGTGTAGCCAGGAACCCCCCAGAAGTGCCAGCAGC
ACAAAGAGCAGCTCTACAGACCCTCCCGCTCCCAAGCACAGAAAAGTACAGGCCAGGGGCTCTGAACACA
AGGGATCTTCTGGGGATGCTGCGAATGCTGCAAATCCTTTTCCAGTGCCTTCTTTGCCGAATGGTAACGC
TAAACCAGGGAAGCCACAGGTGAAGTCTGACAGACAACAAGCTGACTTTCACATGAAGGAGGCTAAAAAG
CTGAAGTGCAAAGCAGAGACAATGGTAGACAAGGCTGGAAAAGCCTTCAAGTATTTGGAAGCCGTCCTCT
CTTTTATCGAGTGTGGAATGGCCTCAGAGTCAGAAAGCTCAGCCAAGTCGGCGTACGCTGTGTACTCAGA
AACCATAGACCTCATTAGGTATGTGATGTCACTAAAATGCTTCTCAGATAACACGATGCCAGCACAAGAG
AAGATATTTGCTGTTTTATGCTTGCGTTGCCAGTCCCTTTTGAACATGGCGATGTTTCGATGTAAGAAAG
ACACAGTGATGAAGTATTCTCGTACTCTCAGTGAACACTTCAAGAGTACTTCCAAAGTGGCCCAGGCACC
TTCTCCATGCACGGCAAGAAGCACAGGCGTTCCGTCCCCCCTCTCCCCAATGCCTTCTCCTGCCAGCTCC
GTGGGGTCCCAATCAAGTGCTGGCAGCAGTATGGGGAGCGTCGGGGTGACGGCCACCGTCAGTACTCCAG
TCTCCATCCAGAACATGACCTCCTCCTATGTCACCATCACATCCCATGTCCTTACGGCCTTTAGCCTTTG
GGAACAGGCCGAGGCCCTCACAAGGAAGAACAAAGAATTCTTCGCTCAGCTCAGCACAAAAGTGCGTGTG
TTGGCCCTCAACAGCAGCCTGGTGGACCTGGTGCACTACACAAGACAGGGCCTGCAGCGGCTAAAACAGT
CACCCAAAGGCCCCTAA

Translation (1218 aa):
MAAHSSLYNEDRNLLRIREKERRNQEAHQEKEAFPEKAPLFPEPYKTAKGDELSSRIQTMLGDYEEMKEF
LSSKSHPHRLDGSEDRPGKPRYPLGHDRGNGAASSSLRTHVYHQPIHTSAPGSRPVGNISHSPKMAQPRM
EPSLHTKIYDGPRLTQDHLSQGHCSRKCDRRAEGDSAPERKLSPLISSLPSPVPPLSPVHSRLQGTSKAH
SSGVSSKSCCVAKSSKDLVAKAQDKETPHDGLVAVTSLGSAPPQPPCQTFPPPPLPSKSAAMQQKPTAYV
RPMDGQDQAPSESPELKLPLEDYGQQSFEKPDLKVPAKAKLTRLRMPSQSVEQPYSNEVHCVEEILKEMT
HSWPPPLTAIHTPSTAEPSRFPFPTKDPLHVSPATQSQKQYDTPSKTHPNPQQGTSMLEDDLQLSDSEDS
DTEQATEKPPSPPAPPSAPQTLPEPVASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAP
EPEPPTTNKWQLDNWLTKVNQPSVPLDGRGSTESPQWRQESKGVAEGSSDQQHPDSKDPLPKSSSKTLRG
PSEGPQPGKRGCPKSPAQQEPPPRQTVGSKQPRKPAKGSGQAEPQASSQAESEVGPLPYGSKEQTSKDRP
KVKTKGRPRAVGSREPKPEVPAPTPQAAVPRPKPPVPTPSEKRKHKSSTAPSKAPSAPQPPKDSAGDRNP
EHSALVSLTQSQGPSHSSRGSSGSVRTSGCRQAVIAQGDGCKDKLLLPLRDTKLLSPLRDSPPPTSLVVK
ITLDLLTRIPQPLGKGSRPRKAEDKQLSAGKKQDSETKSCDSSSRVTKKRKGDPEKEHSNKRHKLDKSQT
ASSSSSHTESSRTKAPRSSSENSRKEMLPPASASSVSSSSSSQKPSRPAQKRPRPDEDTCSQEPPRSASS
TKSSSTDPPAPKHRKVQARGSEHKGSSGDAANAANPFPVPSLPNGNAKPGKPQVKSDRQQADFHMKEAKK
LKCKAETMVDKAGKAFKYLEAVLSFIECGMASESESSAKSAYAVYSETIDLIRYVMSLKCFSDNTMPAQE
KIFAVLCLRCQSLLNMAMFRCKKDTVMKYSRTLSEHFKSTSKVAQAPSPCTARSTGVPSPLSPMPSPASS
VGSQSSAGSSMGSVGVTATVSTPVSIQNMTSSYVTITSHVLTAFSLWEQAEALTRKNKEFFAQLSTKVRV
LALNSSLVDLVHYTRQGLQRLKQSPKGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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