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Report for CCDS89476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89476.1 Public Mus musculus 2 Garnl3 23 108 98 CCDS HistoryNCBI Gene:99326Re-query CCDS DB by CCDS ID:89476.1Re-query CCDS DB by GeneID:99326See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137381.7 ENSMUSP00000122576.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137381.7Link to Ensembl Protein Viewer:ENSMUSP00000122576.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000137381Re-query CCDS DB by Protein ID:ENSMUSP00000122576
Original member Current member NCBI NM_001355201.1 NP_001342130.1 Accepted alive Link to Nucleotide Sequence:NM_001355201.1Link to Protein Sequence:NP_001342130.1Re-query CCDS DB by Nucleotide ID:NM_001355201Re-query CCDS DB by Protein ID:NP_001342130Link to BLAST:NP_001342130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342130.1 1038 Q3V0G7-1 1038 100% 0 0

Chromosomal Locations for CCDS 89476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32986656 32986830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32989506 32989632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32990564 32990779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32992123 32992261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32995047 32995165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32997656 32997763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33002779 33002845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33003784 33003942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33005049 33005227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33006798 33006914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33007249 33007347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33011400 33011511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33015186 33015260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33016685 33016789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33018501 33018616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33022662 33022768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33023489 33023534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33026080 33026188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33031070 33031173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33034031 33034129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33034710 33034785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33041443 33041469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33045488 33045551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33046584 33046648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33052096 33052214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33054158 33054257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33064004 33064078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33085875 33085944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33104853 33104995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3117 nt):
ATGGATCCACTGACCAAGGGGTCCTGTGGGAGTCAGCTGGCACAAACCCTCCTCTGGAAAGCGAAGTCAT
CTCTCTCTTTCGGCATCCAGCCCCTTCAGACTTGGCCAACAAAAGATCCTGAACTAGAGTCCCAGGTCAA
CCTCTCTGTCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAGCATTATGGATCTGTGGAG
CTGCTCATCTCTAGTGATGCCGATGGAGCCATCCAAAGGGCAGGAAGATTCCGAGTGGAGAATGGCTCTA
CAGATGAGAGTGCAGCTGCTCTGCCAGGCACTTGGCGAAGGACAGACGTGCACTTAGAAAACCCGGAGTA
CCACACCCGGTGGTATTTCAAGTACTTTTTAGGACAAGTCCATCAGAATTACATTGGAAATGATGCAGAG
AAGAGCCCCTTCTTCTTGTCTGTCACCCTTTCTGACCAGAATAATCAGCGTGTCCCTCAGTATCGTGCAA
TTCTTTGGCGGAAAACAGGTACGCAAAAAATATGTCTCCCCTACAGTCCCACAAAAACGCTGTCTGTGAA
GTCCATCTTAAGTGCCATGAACCTGGACAAGTTTGAGAAAGGACCTAGGGAAATTTTTCATCCCGAGATA
CAAAAGGACTTGCTGGTTCTGGAAGAGCAGGAGGGCTCTGTGAATTTCAAATTTGGGGTTCTTTTTGCCA
AAGATGGGCAGCTCACAGATGACGAGATGTTCAGCAATGAAATTGGAAGTGAAGCTTTTCAAAAATTTTT
AAATCTCCTCGGTGACACCATTACTCTAAAGGGCTGGACAGGCTACCGTGGCGGTCTGGACACCAAAAAT
AACACCACAGGGATCAACTCAGTCTATACTGTGTACCAAGGGCATGAGGTCATGTTTCACGTTTCCACCA
TGTTGCCATATTCCAAAGAGAACAGACAGCAGGTGGAAAGGAAGCGCCACATTGGAAACGATATTGTCAC
CATCGTGTTCCAGGAAGGAGAGGAGTCCTCTCCCGCCTTTAAGCCTTCCATGATCCGCTCCCATTTTACA
CATATTTTTGCCTTAGTGAGGTATGACCAGCAAAATGACAATTACAGGCTGAAAATATTTTCAGAAGAAA
GTGTGCCACTTTTTGGCCCACCCTTGCCATCCCCTCCGGTGTTTACTGACCACCAGGAATTCAGGGACTT
TTTGCTTGTGAAATTAATTAACGGTGAAAAAGCCACTTTGGAAACCCCAACTTTTGCCCAGAAACGCCGG
CGTACTCTGGACATGTTGATCCGCTCCTTATACCAGGATTTGATGCCGGATTTGCATAAGAATATGCTCA
ATCGGCGATCTTTTAGTGATGTTTTACCGGAGTCACCCAAGTCAGCACGGAAAAAAGAGGAGGCCCGGCA
GGCCGAGTTTGTGAGAATAGGGCAGGCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCATCAAGC
TTGGCAGCATCAGGGATGTGTAAAAAAGAGCCTTGGGAGCCCCAGTGTTTCTGCTGTAATTTCCCTCATG
AAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACGGATGCTGGCGTCTTGCTAGTGGA
CGATGACCTCCCATCCGTGCCCGTGTTTGACAGAACTCTACCTGTGAAGCAGATCCACGTGCTGGAGACC
CTGGACCTTCTGGTTCTCAGAGCAGACAAAGGGAAAGACGCCCGCCTCTTTGTCTTCCGGCTCAGTGCTG
TGCAGAAAGGCCTTGATGGCAGGCAGACTGGAAGGAGCAGATCTGACTGCCGAGAAAACAAGCTGGAGAA
AACCAAAGGATGCCACCTGTATGCTATTAATACTCACCACAGCAGAGAGCTGAGAATCGTGGTTGCAATT
CGCAATAAACTGCTTCTCATCACAAGGAAACCACACAACAAGCCAAGTGGGGTGCCAGGTGTCTCACTCC
TGTCTCCCCTGTCGGAGTCTCCTGTTGAGGAATTCCAGTACATCAGGGAAATCTGCCTGTGTGACTCCCC
AGCAGTGATGGCCTTAGTGGATGGACCAACGGAAGAGAGCGACAACCTCATCTGTGTGGCATATCGCCAT
CAGTTCGACGTGGTAAACGAGAGCACAGGAGAAGCCTTTAGGCTGCACCATGTGGAGGCCAACAAGGTTA
ATTTTGTTGCAGCTATTGATGTTTATGAAGATGGAGAAGCCGGCCTGCTCCTGTGCTACAACTATAGTTG
CATCTATAAAAAGGTTTGCCCCTTTAACGGTGGCTCTTTTTTGCTTCAACCCTCGGCATCGGATTTCCAG
TTCTGTTGGAACCAGGCTCCATATGCAATTGTCTGCGCCTTCCCATACCTCCTGGCCTTTACTACCGACT
CCATGGAGATCCGCCTGGTGGTGAATGGGAACCTGGTCCACACGGCAGTTGTGCCACAGCTGCAGCTCGT
GGCCTCCAGGTCAGATATATACTTCACAGCAGCCACGACTGTGCATGAAGGCTCATCTGGAGGCAGCTCA
AAGGGAGCCAGTGCCCACACGTCTCCTCAGACACCACCAGCCCGGGACACTCCACTGTTTCCTTCTTCCC
TGGGGGAAGGTGAAATTCAGTCTAAAAATCTGTACAAGATTCCACTTAGAAACCTTGTGGGCAGAAGCAT
CGAGCGACCTCTGAAATCACCCTTAGTCTCCAAGGTCATCACCCCGCCCACCTCCATCGGCCTTGGAGTC
GCTGCCATTCCTGTCACGCATTCCTTGTCCCTCTCCCGCATGGAAATTAAAGAGATTGCAAGCAGGACCC
GCAGGGAACTGCTAGGCCTCTCTGATGATGGTGGAACCAAAACAGAGGGAGCACCAAGGGCCAAATCAAA
AACCCGGAAGCGGTTGGAAGAAAGCCAAGGAGGCCCCAAGCCAGAGACTGTGAGGTCAGCTAGTAGTGAC
AGGATCCCATCAGGAATTTTGGAAAGTCCGGCATCAGAAGCCAATCCCGAGGGCCACAACCACTGGGCAA
GTTCTGAGCAGGACGCTGGGGTGGATAAAGAGGGCAGCCCGGGCTCAGGCAGCAGCCCCTTCCAGCTCAT
GGCCTCCTCAGAGGAAGACATCATTGACTTGAAATAG

Translation (1038 aa):
MDPLTKGSCGSQLAQTLLWKAKSSLSFGIQPLQTWPTKDPELESQVNLSVSEDLGCRRGDFSRKHYGSVE
LLISSDADGAIQRAGRFRVENGSTDESAAALPGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAE
KSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREIFHPEI
QKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEAFQKFLNLLGDTITLKGWTGYRGGLDTKN
NTTGINSVYTVYQGHEVMFHVSTMLPYSKENRQQVERKRHIGNDIVTIVFQEGEESSPAFKPSMIRSHFT
HIFALVRYDQQNDNYRLKIFSEESVPLFGPPLPSPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRR
RTLDMLIRSLYQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSS
LAASGMCKKEPWEPQCFCCNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQIHVLET
LDLLVLRADKGKDARLFVFRLSAVQKGLDGRQTGRSRSDCRENKLEKTKGCHLYAINTHHSRELRIVVAI
RNKLLLITRKPHNKPSGVPGVSLLSPLSESPVEEFQYIREICLCDSPAVMALVDGPTEESDNLICVAYRH
QFDVVNESTGEAFRLHHVEANKVNFVAAIDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLLQPSASDFQ
FCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIYFTAATTVHEGSSGGSS
KGASAHTSPQTPPARDTPLFPSSLGEGEIQSKNLYKIPLRNLVGRSIERPLKSPLVSKVITPPTSIGLGV
AAIPVTHSLSLSRMEIKEIASRTRRELLGLSDDGGTKTEGAPRAKSKTRKRLEESQGGPKPETVRSASSD
RIPSGILESPASEANPEGHNHWASSEQDAGVDKEGSPGSGSSPFQLMASSEEDIIDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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