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Report for CCDS88639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88639.1 Public Mus musculus 14 Cnih1 23 108 98 CCDS HistoryNCBI Gene:12793Re-query CCDS DB by CCDS ID:88639.1Re-query CCDS DB by GeneID:12793See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146629.2 ENSMUSP00000116885.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146629.2Link to Ensembl Protein Viewer:ENSMUSP00000116885.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000146629Re-query CCDS DB by Protein ID:ENSMUSP00000116885
Original member Current member NCBI NM_001355011.1 NP_001341940.1 Accepted alive Link to Nucleotide Sequence:NM_001355011.1Link to Protein Sequence:NP_001341940.1Re-query CCDS DB by Nucleotide ID:NM_001355011Re-query CCDS DB by Protein ID:NP_001341940Link to BLAST:NP_001341940.1

Chromosomal Locations for CCDS 88639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 46776522 46776549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46778889 46779032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46780113 46780225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46783826 46783873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46784112 46784180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46788183 46788263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCGTTCACTTTCGCGGCCTTCTGCTATATGCTGGCGCTGCTGCTCACCGCCGCGCTCATCTTCTTCG
CCATCTGGCACATCATAGCATTTGATGAGCTGAAGACCGACTACAAGAACCCTATAGACCAGTGCAATAC
CCTGAACCCTACAGTTGAAAAGGTCAAAAAGATTAAAAGAGTCAAAATTGCACTAAAGCTTGTCCTTCCA
GAGTACCTCATCCACGCGTTCTTCTGTGTCATGTTTCTCTGTGCGGCAGAGTGGCTGACCCTGGGCCTCA
ATATGCCCCTTTTGGCATACCATATTTGGAGGTATATGAGTAGACCAGTGATGAGCGGCCCTGGCCTCTA
TGACCCGACGACCATCATGAATGCAGACATTCTAGCCTACTGTCAGAAGGAAGGATGGTGCAAACTCGCT
TTTTACCTTCTAGCGTTTTTTTACTACCTATACGGCATGATCTATGTTCTGGTGAGCTCTTAG

Translation (160 aa):
MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPTVEKVKKIKRVKIALKLVLP
EYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA
FYLLAFFYYLYGMIYVLVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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