NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20135.1 Public Mus musculus 6 Cbx3 23 108 98 CCDS HistoryNCBI Gene:12417Re-query CCDS DB by CCDS ID:20135.1Re-query CCDS DB by GeneID:12417See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031862.13 ENSMUSP00000031862.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031862.13Link to Ensembl Protein Viewer:ENSMUSP00000031862.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031862Re-query CCDS DB by Protein ID:ENSMUSP00000031862
Original member Current member EBI ENSMUST00000114446.7 ENSMUSP00000110089.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114446.7Link to Ensembl Protein Viewer:ENSMUSP00000110089.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114446Re-query CCDS DB by Protein ID:ENSMUSP00000110089
Original member Current member EBI ENSMUST00000094623.9 ENSMUSP00000110091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094623.9Link to Ensembl Protein Viewer:ENSMUSP00000110091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094623Re-query CCDS DB by Protein ID:ENSMUSP00000110091
Original member Current member NCBI NM_001355002.1 NP_001341931.1 Accepted alive Link to Nucleotide Sequence:NM_001355002.1Link to Protein Sequence:NP_001341931.1Re-query CCDS DB by Nucleotide ID:NM_001355002Re-query CCDS DB by Protein ID:NP_001341931Link to BLAST:NP_001341931.1
Original member Current member NCBI NM_007624.4 NP_031650.3 Accepted alive Link to Nucleotide Sequence:NM_007624.4Link to Protein Sequence:NP_031650.3Re-query CCDS DB by Nucleotide ID:NM_007624Re-query CCDS DB by Protein ID:NP_031650Link to BLAST:NP_031650.3

Chromosomal Locations for CCDS 20135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 51471845 51471868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51475231 51475373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51478438 51478600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51481724 51481818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51482480 51482606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAAAATGGAAAGAGTAAAAAAGTTGAAG
AGGCAGAGCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTA
TTTCCTGAAGTGGAAGGGGTTCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCA
GAATTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTT
TATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAAGAGAGATGCTGCTGACAAACCAAGGGGCTT
TGCCAGAGGTCTCGACCCTGAACGAATAATCGGCGCCACAGACAGCAGCGGAGAGTTAATGTTTCTCATG
AAGTGGAAGGACTCGGACGAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATGAAGTGTCCTCAGATTG
TCATTGCCTTCTACGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGATGAAGCACAATAA

Translation (183 aa):
MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP
ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM
KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH