NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20546.1 Public Mus musculus 6 Vamp1 23 108 98 CCDS HistoryNCBI Gene:22317Re-query CCDS DB by CCDS ID:20546.1Re-query CCDS DB by GeneID:22317See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032487.13 ENSMUSP00000032487.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032487.13Link to Ensembl Protein Viewer:ENSMUSP00000032487.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032487Re-query CCDS DB by Protein ID:ENSMUSP00000032487
Original member Current member NCBI NM_009496.3 NP_033522.1 Accepted alive Link to Nucleotide Sequence:NM_009496.3Link to Protein Sequence:NP_033522.1Re-query CCDS DB by Nucleotide ID:NM_009496Re-query CCDS DB by Protein ID:NP_033522Link to BLAST:NP_033522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033522.1 118 Q62442-1 118 100% 0 0

Chromosomal Locations for CCDS 20546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125215726 125215727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125218574 125218700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125218911 125219069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125219586 125219637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125220050 125220066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTCTGCTCCAGCTCAACCGCCTGCTGAAGGGACAGAAGGAGCTGCCCCTGGTGGGGGTCCTCCTGGTC
CTCCTCCCAACATGACCAGTAACAGGCGGTTACAGCAGACCCAGGCACAAGTGGAGGAGGTGGTGGACAT
CATGCGTGTGAATGTGGACAAGGTCTTGGAGAGGGACCAGAAGTTGTCAGAGCTGGATGACCGGGCTGAC
GCCTTGCAGGCCGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAAAGGAAGTACTGGTGGAAAA
ACTGCAAGATGATGATCATGCTGGGAGCTATCTGTGCCATCATCGTGGTAGTGATTGTAATCTACTTTTT
TACTTGA

Translation (118 aa):
MSAPAQPPAEGTEGAAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRAD
ALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH