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Report for CCDS21082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21082.1 Public Mus musculus 7 Capns1 23 108 98 CCDS HistoryNCBI Gene:12336Re-query CCDS DB by CCDS ID:21082.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001845.12 ENSMUSP00000001845.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001845.12Link to Ensembl Protein Viewer:ENSMUSP00000001845.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001845Re-query CCDS DB by Protein ID:ENSMUSP00000001845
Original member Current member EBI ENSMUST00000126116.2 ENSMUSP00000117951.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126116.2Link to Ensembl Protein Viewer:ENSMUSP00000117951.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000126116Re-query CCDS DB by Protein ID:ENSMUSP00000117951
Original member Current member NCBI NM_009795.4 NP_033925.2 Accepted alive Link to Nucleotide Sequence:NM_009795.4Link to Protein Sequence:NP_033925.2Re-query CCDS DB by Nucleotide ID:NM_009795Re-query CCDS DB by Protein ID:NP_033925Link to BLAST:NP_033925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033925.2 268 O88456 268 100% 0 0

Chromosomal Locations for CCDS 21082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30187507 30187533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30187671 30187729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30190052 30190168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30190479 30190557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30190659 30190727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30192162 30192226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30192320 30192377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30192503 30192592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30192867 30192900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30193878 30194086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTTCTTGGTGAATTCGTTCTTGAAGGGCGGCGGTGGCGGTGGGGGAGGCGGGGGTCTGGGCGGGGGCC
TGGGGAATGTGCTCGGAGGCCTGATCAGCGGAGCTGCTGGCGGCGGCGGCGGTGGCGGTGGAGGCATGGG
ACTGGGAGGAGGTGGCGGAGGCGGTGGAACTGCCATGCGCATCCTGGGCGGAGTCATTAGCGCCATCAGC
GAGGCTGCTGCGCAGTACAACCCGGAGCCTCCGCCTCCACGTAGTCATTACTCCAATATTGAGGCCAACG
AGAGTGAAGAAGTCCGTCAGTTCAGGAAACTTTTTGTCCAGCTGGCTGGAGACGACATGGAGGTCAGCGC
CACAGAACTCATGAATATCCTCAACAAGGTCGTGACCCGACACCCGGATCTGAAAACTGATGGTTTTGGC
ATTGACACTTGTCGGAGCATGGTGGCCGTCATGGATAGCGACACCACAGGCAAGCTGGGCTTTGAGGAGT
TCAAATACCTCTGGAACAACATTAAAAAGTGGCAGGCTATATACAAACGCTTTGATACTGACCGATCAGG
GACTATCGGTAGCCATGAACTTCCAGGGGCCTTTGAGGCAGCAGGATTCCACCTGAATGAGCATCTCTAC
AGCATGATCATCCGGCGCTACGCAGATGAGAGCGGGAACATGGATTTCGATAACTTCATCAGCTGCTTGG
TCAGGCTAGATGCCATGTTCCGCGCTTTCAAATCTCTTGACAAAAATGGCACCGGACAGATCCAAGTGAA
CATCCAGGAGTGGCTGCAGCTGACTATGTATTCCTGA

Translation (268 aa):
MFLVNSFLKGGGGGGGGGGLGGGLGNVLGGLISGAAGGGGGGGGGMGLGGGGGGGGTAMRILGGVISAIS
EAAAQYNPEPPPPRSHYSNIEANESEEVRQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFG
IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAGFHLNEHLY
SMIIRRYADESGNMDFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEWLQLTMYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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