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Report for CCDS40491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40491.1 Public Mus musculus 8 Hsd17b2 23 108 98 CCDS HistoryNCBI Gene:15486Re-query CCDS DB by CCDS ID:40491.1Re-query CCDS DB by GeneID:15486See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034304.8 ENSMUSP00000034304.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034304.8Link to Ensembl Protein Viewer:ENSMUSP00000034304.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034304Re-query CCDS DB by Protein ID:ENSMUSP00000034304
Original member NCBI NM_008290.2 NP_032316.2 Updated not alive Link to Nucleotide Sequence:NM_008290.2Link to Protein Sequence:NP_032316.2Re-query CCDS DB by Nucleotide ID:NM_008290Re-query CCDS DB by Protein ID:NP_032316
Current member NCBI NM_008290.3 NP_032316.2 Accepted alive Link to Nucleotide Sequence:NM_008290.3Link to Protein Sequence:NP_032316.2Re-query CCDS DB by Nucleotide ID:NM_008290Re-query CCDS DB by Protein ID:NP_032316Link to BLAST:NP_032316.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032316.2 381 P51658 381 100% 0 0

Chromosomal Locations for CCDS 40491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 117701996 117702263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117734494 117734706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117742332 117742517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117753186 117753323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117758605 117758945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGCCCGTTTGCCTCTGAGTCAGCATGGCTCTGCTTGGCTGCCGCTGCAGTGCTGGGGGGCACGCTTC
TCTGCGGATGCCGGAGTGGCAGGCAGCTGCGGAGCCAGGCGGTGTGTCTCGCTGGCCTCTGGGGAGGTGC
CTGCCTGCTCAGTCTGTCCCTCCTCTGCACCTTGTTCCTCTTATCCGTGGCCTGCTTCCTTCTTCTGTAT
ATGAGTTCATCTGACCAAGACTTGTTACCTGTGGATCAAAAGGCCGTGCTGGTGACAGGTGCTGATTCCG
GTTTCGGTCACGGTTTGGCCAAGCACCTGGACAAGCTGGGTTTCACAGTGTTTGCTGGAGTGCTGGACAA
AGAGGGCCCGGGAGCAGAGGAACTGAGAAAACACTGCTCTGAGCGTCTTTCAGTGCTCCAGATGGATGTC
ACCAAGCCAGAGCAGATAAAAGATGCTCACAGCAAAGTCACAGAGAAGATACAAGACAAAGGACTGTGGG
CCGTGGTTAACAATGCCGGGGTCTTCCACTTACCTATCGACGGGGAACTCATACCCATGAGCATCTACAG
AAAATGCATGGCCGTGAACTTCTTCGGAACTGTCGAGGTCACCAAGGCGTTTCTGCCTCTACTTAGAAAG
TCCAAGGGGAGGCTGGTGAACGTCAGCAGCATGGGAGGCACGGTTCCACTTCAAATGACATCAGCTTATG
CAGCCACAAAGGCAGCTCTAACCATGTTCTCAACAATCATCAGACAGGAGCTTGACAAATGGGGAGTTAA
AGTTGTGACCATCAAACCCGGAGGCTTCAAAACAAACATCACAGGCTCACAGGACATTTGGGATAAAATG
GAGAAGGAAATCCTGGACCACTTTTCCAAAGATATTCAGGAGAACTATGGCCAGGACTACGTCCATACAC
AGAAGCTCATCATCCCGACCTTGAAAGAGAGGTCCAACCCGGACATCACCCCTGTGCTTCGGGACATCCA
GCATGCCATTTCTGCAAGGAACCCCTCTTCCTTTTATTACCCAGGGCGAATGGCTTACCTGTGGGTCTGC
TTAGCAGCCTACTGCCCCACCAGCTTACTTGACTATGTTATAAAAAAAGGTTTTTATCCACAACCCACGC
CGAGAGCTTTAAGGACAGTGCACTAG

Translation (381 aa):
MSPFASESAWLCLAAAAVLGGTLLCGCRSGRQLRSQAVCLAGLWGGACLLSLSLLCTLFLLSVACFLLLY
MSSSDQDLLPVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSERLSVLQMDV
TKPEQIKDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFFGTVEVTKAFLPLLRK
SKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKVVTIKPGGFKTNITGSQDIWDKM
EKEILDHFSKDIQENYGQDYVHTQKLIIPTLKERSNPDITPVLRDIQHAISARNPSSFYYPGRMAYLWVC
LAAYCPTSLLDYVIKKGFYPQPTPRALRTVH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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