NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45397.1 Public Homo sapiens 16 C16orf90 24 110 108 CCDS HistoryNCBI Gene:646174Re-query CCDS DB by CCDS ID:45397.1Re-query CCDS DB by GeneID:646174See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437192.8 ENSP00000401335.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000437192.8Link to Ensembl Protein Viewer:ENSP00000401335.3Re-query CCDS DB by Nucleotide ID:ENST00000437192Re-query CCDS DB by Protein ID:ENSP00000401335
Original member Current member NCBI NM_001080524.2 NP_001073993.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080524.2Link to Protein Sequence:NP_001073993.1Re-query CCDS DB by Nucleotide ID:NM_001080524Re-query CCDS DB by Protein ID:NP_001073993Link to BLAST:NP_001073993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073993.1 182 A8MZG2 182 100% 0 0

Chromosomal Locations for CCDS 45397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3493839 3493987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3494524 3494877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3495376 3495421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGAAGCCTTGGTCTGTGCATTTTCTGAGCTGCACATAAGAGAAGATGCAGTGAGCCAGGCCCAAGGAC
GCCCCGGCCACCCTGACGCACCCCCCAACATCTACGAGGGGGGCCTGGGGTCCCCGCAGCCGCAGTGCCC
CAGTGCCCAGGGAAGCAAGCCCAAGAACTTCCGGCTGCGCCACCTCCGGGGCCTGGGCCTCTACCTGGAG
AGCCACCCGCCACCCACTGGCCAGTGTGAGAGCCACTGGCTGGGCCGGCTTATGGCTGGGGGCTGCCTGC
CACAGCCTGAGGGCACAGCCTGGGCCCTGGACCTGCCACAGGGGACTCTGGGCCCACGTAACAGCCTCTG
TTCAGCCCTTCTGGAAGCCCGATTGCCCAGGGACAGCCTGGGAAGCAGTGCTTCCAGTTCCAGCATGGAC
CCAGACAAGGGTGCCCTCCCCCAGCCTAGTCCTTCTAGGCTCAGGCCCAAGAGGTCCTGGGGGACCTGGG
AAGAGGCCATGTGTCCCTTGTGCAAGAGAACCCGCTCTGGGGCCCTGGAGAGGCCATAG

Translation (182 aa):
MEALVCAFSELHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLE
SHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMD
PDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH