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Report for CCDS42479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42479.1 Public Homo sapiens 19 GPR108 24 110 108 CCDS HistoryNCBI Gene:56927Re-query CCDS DB by CCDS ID:42479.1Re-query CCDS DB by GeneID:56927See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264080.12 ENSP00000264080.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264080.12Link to Ensembl Protein Viewer:ENSP00000264080.5Re-query CCDS DB by Nucleotide ID:ENST00000264080Re-query CCDS DB by Protein ID:ENSP00000264080
Original member Current member NCBI NM_001080452.2 NP_001073921.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080452.2Link to Protein Sequence:NP_001073921.1Re-query CCDS DB by Nucleotide ID:NM_001080452Re-query CCDS DB by Protein ID:NP_001073921Link to BLAST:NP_001073921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073921.1 543 Q9NPR9 543 100% 0 0

Chromosomal Locations for CCDS 42479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6730312 6730384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6730987 6731111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731199 6731282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731473 6731522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731891 6731934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732025 6732155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732263 6732380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732476 6732549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732987 6733062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6733168 6733301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6733570 6733674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6733845 6733913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6734005 6734054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6734183 6734307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6735622 6735704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6735908 6735958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6736592 6736711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6737457 6737576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGCAGTGAGCGAGAGGAGGGGGCTCGGCCGCGGGAGCCCCGCGGAGTGGGGGCAGCGGCTACTTCTGG
TGCTGCTGCTGGGTGGCTGCTCCGGGCGCATCCACCAGCTGGCGCTGACGGGGGAGAAGCGAGCGGACAT
CCAGCTGAACAGCTTCGGTTTCTACACCAATGGCTCTCTGGAGGTGGAGTTGAGCGTCCTGCGGCTGGGC
CTCCGGGAGGCAGAAGAGAAGTCCCTGCTGGTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTC
GCTCCTATTCAACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTT
CCTCATCAACACCAAGGATCTGCAGGTCCAGGTGCGGAAGTATGGAGAGCAGAAGACGTTGTTTATCTTT
CCCGGGCTCCTCCCGGAAGCACCCTCCAAACCAGGGCTCCCGAAGCCACAGGCCACAGTCCCCCGCAAGG
TGGATGGCGGAGGGACCTCTGCAGCCAGCAAGCCCAAGTCAACACCCGCAGTGATTCAGGGTCCTAGTGG
GAAGGACAAGGACCTGGTGTTGGGCCTGAGCCACCTCAACAACTCCTACAACTTCAGTTTCCACGTGGTG
ATCGGCTCTCAGGCGGAAGAAGGCCAGTACAGCCTGAACTTCCACAACTGCAACAATTCAGTGCCAGGAA
AGGAGCATCCATTCGACATCACGGTGATGATCCGGGAGAAGAACCCCGATGGCTTCCTGTCGGCAGCGGA
GATGCCCCTTTTCAAGCTCTACATGGTCATGTCCGCCTGCTTCCTGGCCGCTGGCATCTTCTGGGTGTCC
ATCCTCTGCAGGAACACGTACAGCGTCTTCAAGATCCACTGGCTCATGGCGGCCTTGGCCTTCACCAAGA
GCATCTCTCTCCTCTTCCACAGCATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCT
TGCCGTCATGTACTACATCGCACACCTGCTGAAGGGCGCCCTCCTCTTCATCACCATCGCCCTGATTGGC
TCAGGCTGGGCCTTCATCAAGTACGTCCTGTCGGATAAGGAGAAGAAGGTCTTTGGGATCGTGATCCCCA
TGCAGGTCCTGGCCAACGTGGCCTACATCATCATCGAGTCCCGCGAGGAAGGCGCCAGCGACTACGTGCT
GTGGAAGGAGATTTTGTTCCTGGTGGACCTCATCTGCTGTGGTGCCATCCTGTTCCCCGTAGTCTGGTCC
ATCCGGCATCTCCAGGATGCGTCTGGCACAGACGGGAAGGTGGCAGTGAACCTGGCCAAGCTGAAGCTGT
TCCGGCATTACTATGTCATGGTCATCTGCTACGTCTACTTCACCCGCATCATCGCCATCCTGCTGCAGGT
GGCTGTGCCCTTTCAGTGGCAGTGGCTGTACCAGCTCTTGGTGGAGGGCTCCACCCTGGCCTTCTTCGTG
CTCACGGGCTACAAGTTCCAGCCCACAGGAAACAACCCGTACCTGCAGCTGCCCCAGGAGGACGAGGAGG
ATGTTCAGATGGAGCAAGTAATGACGGACTCTGGGTTCCGGGAAGGCCTCTCCAAAGTCAACAAAACAGC
CAGCGGGCGGGAACTGTTATGA

Translation (543 aa):
MAVSERRGLGRGSPAEWGQRLLLVLLLGGCSGRIHQLALTGEKRADIQLNSFGFYTNGSLEVELSVLRLG
LREAEEKSLLVGFSLSRVRSGRVRSYSTRDFQDCPLQKNSSSFLVLFLINTKDLQVQVRKYGEQKTLFIF
PGLLPEAPSKPGLPKPQATVPRKVDGGGTSAASKPKSTPAVIQGPSGKDKDLVLGLSHLNNSYNFSFHVV
IGSQAEEGQYSLNFHNCNNSVPGKEHPFDITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVS
ILCRNTYSVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIG
SGWAFIKYVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWS
IRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFV
LTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGRELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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