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Report for CCDS37488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37488.1 Public Mus musculus 17 Rnps1 23 108 98 CCDS HistoryNCBI Gene:19826Re-query CCDS DB by CCDS ID:37488.1Re-query CCDS DB by GeneID:19826See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088512.12 ENSMUSP00000085867.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088512.12Link to Ensembl Protein Viewer:ENSMUSP00000085867.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088512Re-query CCDS DB by Protein ID:ENSMUSP00000085867
Original member Current member EBI ENSMUST00000163717.1 ENSMUSP00000126345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163717.1Link to Ensembl Protein Viewer:ENSMUSP00000126345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163717Re-query CCDS DB by Protein ID:ENSMUSP00000126345
Original member Current member NCBI NM_001080127.1 NP_001073596.1 Accepted alive Link to Nucleotide Sequence:NM_001080127.1Link to Protein Sequence:NP_001073596.1Re-query CCDS DB by Nucleotide ID:NM_001080127Re-query CCDS DB by Protein ID:NP_001073596Link to BLAST:NP_001073596.1
Original member Current member NCBI NM_001357626.1 NP_001344555.1 Accepted alive Link to Nucleotide Sequence:NM_001357626.1Link to Protein Sequence:NP_001344555.1Re-query CCDS DB by Nucleotide ID:NM_001357626Re-query CCDS DB by Protein ID:NP_001344555Link to BLAST:NP_001344555.1
Original member Current member NCBI NM_009070.2 NP_033096.2 Accepted alive Link to Nucleotide Sequence:NM_009070.2Link to Protein Sequence:NP_033096.2Re-query CCDS DB by Nucleotide ID:NM_009070Re-query CCDS DB by Protein ID:NP_033096Link to BLAST:NP_033096.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073596.1 305 Q99M28-1 305 100% 0 0
NP_001344555.1 305 Q99M28-1 305 100% 0 0
NP_033096.2 305 Q99M28-1 305 100% 0 0

Chromosomal Locations for CCDS 37488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24418148 24418218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24418457 24418612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24420206 24420397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24421749 24421851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24422150 24422303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24424402 24424543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24425086 24425185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAGAATAATAAAAAGTCCAGCACTA
GGGCTCCTTCTCCTACCAAACGCAAGGACCGATCTGATGAGAAGTCCAAGGATCGATCTAAAGATAAAGG
GGCCACTAAAGAGTCAAGTGAGAAGGATCGTGGCAGAGATAAGACTCGGAAGAGACGCAGTGCTTCAAGC
GGAAGCAGCAGTACCAGGTCTAGGTCCAGCTCCACCTCCAGCTCGGGCTCCAGCACCAGCACAGGCTCAA
GCAGTGGCTCCAGCTCGTCCTCTGCATCCAGCCGCTCAGGAAGCTCCAGCACGTCCCGGAGCTCCAGTTC
TAGCAGCTCCTCCGGCTCCCCAAGCCCTTCTCGGCGCAGGCATGACAACAGGCGGCGCTCCCGCTCCAAA
TCCAAACCACCTAAAAGAGATGAAAAAGAGAGGAAAAGGCGGAGCCCTTCACCTAAACCAACCAAAGTGC
ACATTGGGAGGCTCACCAGGAATGTGACCAAGGATCATATCATGGAAATATTTTCTACTTACGGGAAAAT
TAAAATGATTGACATGCCTGTTGAGAGGATGCATCCTCACCTCTCCAAAGGCTATGCATATGTGGAGTTT
GAGAATCCCGATGAAGCAGAGAAGGCTCTGAAACACATGGATGGAGGACAAATTGATGGCCAAGAGATCA
CTGCTACTGCTGTGTTGGCACCCTGGCCTCGGCCACCACCTCGGCGATTCAGCCCCCCTAGGAGGATGCT
TCCACCACCTCCCATGTGGCGTAGGTCACCCCCACGGATGAGGAGAAGGTCTCGATCCCCAAGACGCAGG
TCCCCTGTGCGTAGGAGGTCTCGCTCTCCTGGCCGCCGCCGCCACAGGAGCCGATCCAGCTCCAACTCCT
CCCGATAA

Translation (305 aa):
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS
GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK
SKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEF
ENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR
SPVRRRSRSPGRRRHRSRSSSNSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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