NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22999.1 Public Mus musculus 9 Or8c13 23 108 98 CCDS HistoryNCBI Gene:258471Re-query CCDS DB by CCDS ID:22999.1Re-query CCDS DB by GeneID:258471See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062535.1 ENSMUSP00000055451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062535.1Link to Ensembl Protein Viewer:ENSMUSP00000055451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000062535Re-query CCDS DB by Protein ID:ENSMUSP00000055451
Original member Current member NCBI NM_146478.2 NP_666689.2 Accepted alive Link to Nucleotide Sequence:NM_146478.2Link to Protein Sequence:NP_666689.2Re-query CCDS DB by Nucleotide ID:NM_146478Re-query CCDS DB by Protein ID:NP_666689Link to BLAST:NP_666689.2

Chromosomal Locations for CCDS 22999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38179871 38180821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCAACGGGGAATCACTATTCTGTGACTGAGTTTATTCTCACTGGACTGACAGAGCAACCTGAACTCC
AGATGCCCCTGTTTTTCCTGTTCTTGGTGAACTGTTTAATCACTGTGGTGGGAAACTTGAGTTTAATGAG
TCTTATTTGCTGCAATTCAAACCTTCAGACACCTATGCACTTTTTTCTCTTCAATCTGTCTTTTATTGAT
TTGTGCTATTCATTTGCCTTTACTCCCAAAACACTAATGAGTTTTGTCTTAGAGAAGAACATAATTTATT
TTACAGGATGCATGACACAGCTGTTTTTCATGTGCCTTTTTGCCAATTCAGAGTGCTATTTGGTGACAGC
CATGGACTATGATCACTATGTTGCCATCTGTCAACCCCTGCTGTACATGATCATCACGTCTCCTATGACA
TGTTCCCTGATGATGTTTGGTTCATACTTGATGGGAGGTATTGGTGCAATTGTCCATACAGGGTGTATGA
TCAGGCTCAACTTTTGTGGTTCAAACATCATCAACCATTACATGTATGATATCTTCCCCCTTCTCCAGCT
CTCCTGCAGCAGCATCTATGCCAATGAGCTTGTGAGTTCTGTTTTTGTAAGCACAGTAGTTCTTGCATCT
AGCTTTCTCATCTTAACCTCCTATGCTTTGATTCTTTTTAATATCACTCAGTTATCAGGTAAGGGTTTGT
CCAAAGCCATGAGCACCTGTAGTTCTCACATAATGACTGTTGTCCTATTTTATGGATTTGCTATGCTTAC
ACATGTCAAAACATCATCTGATGAATCTGTGAATCAGGGGAATTTTTTTTGTCTATTTTGTACATTTTTG
GTGCCTTTGCTGAATCCCTTTATTTACAGTCTCAAGAATAAGGAAGTCAAGCTTGCTCTAAAGAGAACAC
TGAGGAGACTCACAGTGAGTGAATCACTGGGACTGCCATAG

Translation (316 aa):
MATGNHYSVTEFILTGLTEQPELQMPLFFLFLVNCLITVVGNLSLMSLICCNSNLQTPMHFFLFNLSFID
LCYSFAFTPKTLMSFVLEKNIIYFTGCMTQLFFMCLFANSECYLVTAMDYDHYVAICQPLLYMIITSPMT
CSLMMFGSYLMGGIGAIVHTGCMIRLNFCGSNIINHYMYDIFPLLQLSCSSIYANELVSSVFVSTVVLAS
SFLILTSYALILFNITQLSGKGLSKAMSTCSSHIMTVVLFYGFAMLTHVKTSSDESVNQGNFFCLFCTFL
VPLLNPFIYSLKNKEVKLALKRTLRRLTVSESLGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH