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Report for CCDS39829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39829.1 Public Mus musculus 7 Zfp61 23 108 98 CCDS HistoryNCBI Gene:22719Re-query CCDS DB by CCDS ID:39829.1Re-query CCDS DB by GeneID:22719See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077780.13 ENSMUSP00000076954.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077780.13Link to Ensembl Protein Viewer:ENSMUSP00000076954.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000077780Re-query CCDS DB by Protein ID:ENSMUSP00000076954
Original member Current member EBI ENSMUST00000165241.7 ENSMUSP00000132551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165241.7Link to Ensembl Protein Viewer:ENSMUSP00000132551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165241Re-query CCDS DB by Protein ID:ENSMUSP00000132551
Original member Current member NCBI NM_009561.2 NP_033587.2 Accepted alive Link to Nucleotide Sequence:NM_009561.2Link to Protein Sequence:NP_033587.2Re-query CCDS DB by Nucleotide ID:NM_009561Re-query CCDS DB by Protein ID:NP_033587Link to BLAST:NP_033587.2

Chromosomal Locations for CCDS 39829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24291057 24292504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24293345 24293434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24294955 24295081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24295979 24295981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGAGGCAGTAACATTCAAGGATGTGGCTGTGGTCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCG
CCCAGAGGACGCTGTACCAAGATGTGATGGTTGAGAATTTTCGGAACCTGCTCTCAGTGGAGTATCAACT
TTTCAAACGAGATAAACCATACCTGGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAG
AGAGATTCAGGGATTAACGGTCAGAGTGCGAGAGGAGCAGTCCGAGGGAGAGGGTCACCTGAAGCCCTTC
CCTGCTGGCAAATCTGGCAGTGGGTCACGGACGACTTAACCACGAGTCAAAACTCTGTGGTAAATACTCC
TCAGCTACAGGGCAAGGCTCCCTGCCAGTCCAGGCCAAGGCCATCTGCTCCCGTTTCTGTAGATGAGAAC
TATATAAAGAGTCATACAATAAGTGTTCCCATCCACTCCGGAAGGCCCCCACTTCCCACTTTGAGAGCCC
AGGGAACTTCCCTGACTGAGCGGCAGACTCGGAAGGATCAGTACCACCAAGGCTCCCACAGAGATGAAGC
GGGTCAGAGGAAACGGGATGCTCACCCTACAAGTTGGATTCCACGTCCCCGCTCTGATCACAGAGTATGC
AAAAGTAAGGGGCGGTGTAGCCCCAGTGATCATGGGAGAGACGGGGTGGAAGTGGTGCCATTCGACCAGA
ATGGAGGGATTCACACTAGACAGAAAAGCTCCCAACACAGAGAAGCCGTTACCGATCTCTCCAGCTCGGA
TCCTCACCAAGTGTTAGACTCAGGAGGGAGGGCTTGTGCATGTGTTGAATGTGGGAGAGGCTCCCCTTGT
GGCACAGATGGCTGCATTCATCAAGGAGGTCGCACAGGAGAAGAACGGAAGGAATTCGGTCACCAGAGGG
TCTGCACGCCAGTGAAACCGTACACCTGTGAGCAGTGCGGAAAAGTCTTTACTTGTAGATCAGCACTTAA
TGTCCACGTGAAAGTGCACACGAGGGAGAGACCTTACAATTGTGAGACCTGCGGGAGTGCCTTCAGCCAG
GCCTCCCACCTCCAGGACCACCAGAGGCTCCACACTGGGGAGAAGCCGTTCAAATGCGATGCCTGCGGCA
AGAGTTTCAGTCGCAGTTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACAAGTG
CGGGGAGTGTGGGAAGAGCTTCATTTGTAGCTCCAATCTCTACATCCATCAGCGAGTCCACACAGGAGAA
AAGCCCTATAAATGCGTGGACTGCGGGAAAGAATTCAGTCGCCCTTCGAGTCTTCAGGCCCATCAGGGCA
TTCACACCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCTATACTCTGAATTCAAATCTCCA
AGTCCACTTGAGAGTCCACACGGGGGAGAAGCCGTACAGTTGTGACGTGTGTGGGAAAGGCTTCAGTCGC
TCTTCACAGCTACAGTCCCATCAGAGAGTCCACACGGGGGAGAAGCCTTACAAGTGTGATGTGTGTGGTA
AGAGCTTTGGTTGGCGGTCAAATCTTATAATTCATCACAGAATCCACAGCAGTGGTAAACCTTACAAGAG
CAAGAGAGATGATAAAAACATCAAGGAGTCCACTCAGGAAAAATGTTCTATAAAATAG

Translation (555 aa):
MEAVTFKDVAVVFTKEEFRLLDSAQRTLYQDVMVENFRNLLSVEYQLFKRDKPYLEREEKPQMRRAAPRE
RDSGINGQSARGAVRGRGSPEALPCWQIWQWVTDDLTTSQNSVVNTPQLQGKAPCQSRPRPSAPVSVDEN
YIKSHTISVPIHSGRPPLPTLRAQGTSLTERQTRKDQYHQGSHRDEAGQRKRDAHPTSWIPRPRSDHRVC
KSKGRCSPSDHGRDGVEVVPFDQNGGIHTRQKSSQHREAVTDLSSSDPHQVLDSGGRACACVECGRGSPC
GTDGCIHQGGRTGEERKEFGHQRVCTPVKPYTCEQCGKVFTCRSALNVHVKVHTRERPYNCETCGSAFSQ
ASHLQDHQRLHTGEKPFKCDACGKSFSRSSHLRSHQRVHTGEKPYKCGECGKSFICSSNLYIHQRVHTGE
KPYKCVDCGKEFSRPSSLQAHQGIHTGEKSYVCTMCGKGYTLNSNLQVHLRVHTGEKPYSCDVCGKGFSR
SSQLQSHQRVHTGEKPYKCDVCGKSFGWRSNLIIHHRIHSSGKPYKSKRDDKNIKESTQEKCSIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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