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Report for CCDS27703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27703.1 Public Mus musculus 15 Bik 23 108 98 CCDS HistoryNCBI Gene:12124Re-query CCDS DB by CCDS ID:27703.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016902.4 ENSMUSP00000016902.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016902.4Link to Ensembl Protein Viewer:ENSMUSP00000016902.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016902Re-query CCDS DB by Protein ID:ENSMUSP00000016902
Original member Current member EBI ENSMUST00000230912.1 ENSMUSP00000155083.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230912.1Link to Ensembl Protein Viewer:ENSMUSP00000155083.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230912Re-query CCDS DB by Protein ID:ENSMUSP00000155083
Original member Current member NCBI NM_007546.2 NP_031572.1 Accepted alive Link to Nucleotide Sequence:NM_007546.2Link to Protein Sequence:NP_031572.1Re-query CCDS DB by Nucleotide ID:NM_007546Re-query CCDS DB by Protein ID:NP_031572Link to BLAST:NP_031572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031572.1 150 O70337 150 100% 0 0

Chromosomal Locations for CCDS 27703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83541300 83541442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83543065 83543163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83543580 83543697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83544133 83544225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTCGGAGGCGAGACTTATGGCCAGAGACGTCATCAAGACTGTTCCACACGACCAGGTCCCCCAACCTC
CAGTGGCCTCTGAGACTCCCAGCATGAAGGAGCCTGTGAGAGACGTGGACCTCATGGAGTGCGTGGAAGG
CAGAAACCAGGTGGCCTTGAGGCTGGCCTGCATCGGCGATGAGATGGACCTGTGTCTGCGGAGCCCCCGT
CTGGTCCAGCTGCCTGGGATTGCTATACACAGACTCGCTGTCACCTACAGCCGGACAGGTGTCAGAGGTA
TTTTCAGGAGCTTGATTCGAAGCCTCACCAACCTCAGGGAAAACATCTGGTCCTGGAGAGTCTTGACTCC
TGGCGCCTGGGTGTCACCTGACCAGGACCCTGGGCAGCTGTTTCCGATGGTGCTGCTGGTCTTCTTGCTG
CTGGGTGGGGCCTGGTATTTGCAGCTTCAGTGA

Translation (150 aa):
MSEARLMARDVIKTVPHDQVPQPPVASETPSMKEPVRDVDLMECVEGRNQVALRLACIGDEMDLCLRSPR
LVQLPGIAIHRLAVTYSRTGVRGIFRSLIRSLTNLRENIWSWRVLTPGAWVSPDQDPGQLFPMVLLVFLL
LGGAWYLQLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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