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Report for CCDS19895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19895.1 Public Mus musculus 6 Bet1 23 108 98 CCDS HistoryNCBI Gene:12068Re-query CCDS DB by CCDS ID:19895.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049166.4 ENSMUSP00000044877.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049166.4Link to Ensembl Protein Viewer:ENSMUSP00000044877.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049166Re-query CCDS DB by Protein ID:ENSMUSP00000044877
Original member Current member NCBI NM_009748.3 NP_033878.1 Accepted alive Link to Nucleotide Sequence:NM_009748.3Link to Protein Sequence:NP_033878.1Re-query CCDS DB by Nucleotide ID:NM_009748Re-query CCDS DB by Protein ID:NP_033878Link to BLAST:NP_033878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033878.1 118 O35623 118 100% 0 0

Chromosomal Locations for CCDS 19895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4077881 4078036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4079961 4080017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4082458 4082582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4086777 4086795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGAGGCGTGCAGGCCTGGGTGATGGAGCACCTCCTGGCAGCTATGGGAACTATGGCTATGCCAATACTG
GTTATAATGCTTGTGAAGAAGAGAATGACAGACTCACTGAAAGTCTGAGAAGCAAAGTAACGGCTATAAA
ATCTCTTTCCATTGAAATAGGCCATGAAGTTAAAAATCAAAACAAACTATTAGCTGAAATGGATTCACAA
TTTGATTCTACAACTGGATTTCTAGGTAAAACCATGGGAAGACTGAAGATTTTGTCCAGAGGGAGCCAAA
CAAAATTGCTATGCTATATGATGCTGTTTTCATTGTTTGTCTTTTTTGTCATTTATTGGATTATTAAACT
GAGGTGA

Translation (118 aa):
MRRAGLGDGAPPGSYGNYGYANTGYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEMDSQ
FDSTTGFLGKTMGRLKILSRGSQTKLLCYMMLFSLFVFFVIYWIIKLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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