NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35941.1 Public Mus musculus 10 Slc5a4a 23 108 98 CCDS HistoryNCBI Gene:64452Re-query CCDS DB by CCDS ID:35941.1Re-query CCDS DB by GeneID:64452See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020450.3 ENSMUSP00000020450.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020450.3Link to Ensembl Protein Viewer:ENSMUSP00000020450.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020450Re-query CCDS DB by Protein ID:ENSMUSP00000020450
Original member Current member NCBI NM_133184.2 NP_573447.2 Accepted alive Link to Nucleotide Sequence:NM_133184.2Link to Protein Sequence:NP_573447.2Re-query CCDS DB by Nucleotide ID:NM_133184Re-query CCDS DB by Protein ID:NP_573447Link to BLAST:NP_573447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573447.2 656 Q9ET37 656 100% 0 0

Chromosomal Locations for CCDS 35941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76147531 76147665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76148361 76148432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76150467 76150571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76153577 76153636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76157018 76157122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76162523 76162628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76163689 76163769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76166676 76166896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76170651 76170786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76176519 76176626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76178090 76178240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76181651 76181819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76182670 76182885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76186498 76186600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76189059 76189261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGCCAGCACAGCCAGTGTCAGTACCAGCACTGCAAGCTCAGAGCTGTCTTCACTGTCAAATAACATCA
ATAATGCTGCTGACATCTCTGTCATCGTCATCTATTTTGTGGTGGTCATGGCTGTTGGAGTGTGGGCAAT
GCTGAAGACGAACCGAAGCACTGTTGGAGGCTTCTTTCTGGCAGGTCGATCTATGACTTGGTGGCCAATG
GGCGCCTCTCTGTTTGCCAGCAACATCGGCAGTGGCCACTTCGTGGGCCTGGCTGGGACAGGCGCAGCTT
CAGGAATTGCTGTCACGGCGTTTGAATCACATTCGTTTGCCTTGCTGCTGGTTCTGGGGTGGATTTTTGT
CCCCATTTACATCAAGGCTGGGGTGATGACCATGCCAGAATATCTCAAGAAGCGCTTTGGTGGGAAGAGA
CTCCAGATCTATCTCTCCATCCTTTTCCTTTTCATCTGCGTGATATTGACAATCTCAGCAGACATATTTT
CTGGAGCCATCTTCATAAAGCTGGCTTTGGGACTGAACCTTTACCTGGCCATCCTCATCCTCTTGGCTAT
CACAGCCATCTTCACAATCACCGGGGGCTTGGCATCCGTGATTTACACAGACACCGTCCAGGCTGTCATC
ATGTTGGTTGGGTCCTTCATCCTCATGGTATTCGCGTTTGTGGAAGTTGGAGGCTACGAGAGCTTTACCG
AGAAGTTCATGAACGCCATCCCGTCTGTAGTGGAGGGGGACAACCTGACCATCAACTCCAGGTGCTACAC
TCCTCAGCCCGACTCCTTCCACATCTTCCGAGACCCTGTCACTGGAGACATTCCATGGCCGGGAACTGCG
TTTGGAATGCCTATTACAGCTTTGTGGTACTGGTGCATAAACCAGGTCATTGTACAGCGCTGCTTATGTG
GCAAGAACCTGTCCCACGTGAAGGCTGCCTGCATCCTGTGTGGCTACCTGAAGCTGCTTCCCTTATTCTT
CATGGTGATGCCGGGAATGATCAGTCGCATTCTGTACACAGATATGGTGGCCTGCGTTGTGCCTTCTGAG
TGTGTGAAGCATTGTGGCGTTGATGTCGGCTGCACTAACTATGCCTACCCGATGCTGGTGCTGAAGCTGA
TGCCCATGGGACTGCGAGGCCTGATGCTGTCAGTCATGCTGGCTTCTCTCATGAGCTCCCTGACCTCCGT
CTTCAACAGCGCCAGCACCCTCTTCACCATAGACCTGTACACCAAGATAAGGAAGAAGGCATCAGAGAGA
GAGCTCCTGATAGCCGGACGGCTGTTTGTCTCTGTGCTAATTGTTACCAGCATCTTGTGGGTTCCCATAG
TAGAAGTATCTCAAGGTGGACAACTGGTCCATTATACAGAAGCAATTTCAAGCTACCTTGGGCCCCCCAT
TGCAGCTGTCTTCCTGGTCGCCGTCTTCTGTAAAAGAGCCAATGAACAAGGAGCCTTCTGGGGTCTGATG
GTTGGATTGGTGATGGGCCTTATCCGAATGATCGCAGAGTTTTCTTACGGGACAGGGAGTTGTCTGGCTC
CCAGCAGCTGTCCCAAGATCATCTGTGGAGTACACTATCTGTACTTTGCCATCATCCTTTTTTTCGTGTG
TATATTGGTTATCCTGGGAGTTTCCTACTTAACAAAACCCATTCCCGATGTTCATCTGCATCGCCTGTGC
TGGGCTCTTCGGAACAGTAAGGAGGAAAGAATCGATTTAGACGCAGAAGACAAGGAGGAGAACGGAGCTG
ATGATAGAACTGAAGAAGACCAAACTGAGAAACCTCGTGGATGTCTCAAGAAGACGTGTGACCTATTCTG
TGGTTTGCAAAGAGCTGAATTCAAGTTGACTAAAGTAGAGGAGGAAGCTCTGACAGACACAACAGAGAAG
CCCTTCTGGCGGACGGTCATGAACGTCAATGTCATCCTCCTCTTGGCTGTAGCAGCGTTTTTCTATGGCT
ATTTTGCCTGA

Translation (656 aa):
MASTASVSTSTASSELSSLSNNINNAADISVIVIYFVVVMAVGVWAMLKTNRSTVGGFFLAGRSMTWWPM
GASLFASNIGSGHFVGLAGTGAASGIAVTAFESHSFALLLVLGWIFVPIYIKAGVMTMPEYLKKRFGGKR
LQIYLSILFLFICVILTISADIFSGAIFIKLALGLNLYLAILILLAITAIFTITGGLASVIYTDTVQAVI
MLVGSFILMVFAFVEVGGYESFTEKFMNAIPSVVEGDNLTINSRCYTPQPDSFHIFRDPVTGDIPWPGTA
FGMPITALWYWCINQVIVQRCLCGKNLSHVKAACILCGYLKLLPLFFMVMPGMISRILYTDMVACVVPSE
CVKHCGVDVGCTNYAYPMLVLKLMPMGLRGLMLSVMLASLMSSLTSVFNSASTLFTIDLYTKIRKKASER
ELLIAGRLFVSVLIVTSILWVPIVEVSQGGQLVHYTEAISSYLGPPIAAVFLVAVFCKRANEQGAFWGLM
VGLVMGLIRMIAEFSYGTGSCLAPSSCPKIICGVHYLYFAIILFFVCILVILGVSYLTKPIPDVHLHRLC
WALRNSKEERIDLDAEDKEENGADDRTEEDQTEKPRGCLKKTCDLFCGLQRAEFKLTKVEEEALTDTTEK
PFWRTVMNVNVILLLAVAAFFYGYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH