CCDS Report for Consensus CDS

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Report for CCDS19500.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19500.1	Public	Mus musculus	5	Brdt	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19500.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000031215.14	ENSMUSP00000031215.8	Accepted	alive
		NCBI	NM_054054.2	NP_473395.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_473395.2	956	Q91Y44-1	956	100%	0	0

Chromosomal Locations for CCDS 19500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	107342071	107342259
5	107343553	107343690
5	107345136	107345250
5	107348466	107348638
5	107350076	107350426
5	107356752	107356880
5	107357747	107357935
5	107358837	107359009
5	107359193	107359473
5	107359580	107359705
5	107359772	107359987
5	107369303	107369364
5	107370155	107370329
5	107376265	107376362
5	107377010	107377215
5	107377904	107378084
5	107385458	107385526

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGTCTCTGCCAAGTCGACAAACAGCTATTGTTAACCCCCCTCCACCAGAGTACATAAACACTAAGAAGA GTGGGCGGTTGACGAATCAGCTGCAGTTCCTACAGAGGGTTGTGCTGAAGGCCCTGTGGAAGCACGGCTT CTCTTGGCCTTTCCAACAGCCGGTGGACGCCGTGAAACTAAAGCTGCCTGACTATTACACCATCATAAAA ACCCCAATGGATTTAAATACAATTAAGAAGCGGTTGGAAAATAAGTATTATGAGAAGGCTTCCGAATGCA TAGAAGACTTCAACACAATGTTCTCAAACTGCTACTTATACAACAAGACTGGAGATGACATTGTTGTTAT GGCCCAAGCTCTAGAGAAGTTATTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGGGT GGTAAGGAGAGAATAAAGAAAGATATCCAACAAAAGATAGCGGTTTCCTCTGCTAAGGAACAAATCCCCT CCAAAGCGGCAGAGAATGTCTTTAAGCGGCAAGAGATTCCTTCTGGGCTTCCTGACATCTCTCTCTCGCC CTTAAACATGGCACAAGAAGCTCCCCCGATCTGTGACTCGCAGTCTCTGGTCCAAATTACAAAGGGTGTG AAGAGGCGAGCAGACACAACAACTCCTACCACTTCCATAGCTAAAGCAAGTAGCGAATCTCCTCCGACAC TTAGAGAAACAAAGCCAGTGAACATGCCAGTAAAAGAAAATACAGTAAAGAACGTTTTGCCAGACTCTCA GCAACAACACAAAGTTTTAAAAACAGTCAAAGTAACGGAGCAATTAAAGCACTGCAGCGAGATTCTTAAA GAAATGCTTGCCAAGAAACATTTGCCGTATGCATGGCCCTTCTATAATCCTGTGGATGCTGATGCTTTGG GACTCCACAACTACTATGACGTTGTCAAAAATCCCATGGATCTCGGAACGATCAAGGGGAAAATGGACAA TCAAGAATATAAGGATGCATATGAATTTGCTGCAGATGTCAGACTGATGTTCATGAACTGTTACAAGTAT AATCCTCCCGATCATGAAGTTGTGGCGATGGCTCGGACCCTTCAGGATGTTTTTGAACTACATTTTGCCA AGATTCCCGATGAACCTATTGAGAGTATGCATGCATGCCACCTTACAACAAACAGTGCACAAGCCCTCAG CAGAGAAAGCAGCAGCGAGGCCTCCTCGGGGGACGCCTCTTCTGAAGACTCTGAGGATGAACGAGTGCAG CATCTTGCCAAGCTTCAGGAGCAGCTTAATGCTGTTCATCAGCAGCTGCAAGTTCTGTCCCAAGTTCCAT TACGTAAGCTGAAGAAAAAGAATGAGAAGTCCAAAAGGGCGCCAAAAAGGAAAAAGGTTAATAACAGAGA TGAAAACCCAAGGAAAAAGCCTAAGCAAATGAAGCAAAAGGAGAAGGCCAAAATCAATCAACCAAAGAAG AAGAAGCCGCTTTTGAAATCGGAAGAGGAAGACAATGCGAAGCCTATGAACTACGATGAGAAAAGGCAGC TGAGCTTGGACATAAACAAACTGCCTGGAGACAAGCTTGGTCGAATAGTTCACATAATACAGTCAAGGGA GCCTTCCCTGAGAAACTCCAACCCGGACGAGATCGAGATCGACTTTGAGACCCTGAAGGCATCCACACTT AGAGAACTGGAGAAGTATGTCCTGGCCTGTCTGAGGAAGAGGTCGCTGAAGCCCCAAGCAAAGAAGGTTG TCAGGTCTAAGGAGGAGCTCCATTCTGAAAAAAAGCTGGAGCTGGAGAGGCGGTTGCTGGACGTCAACAA TCAGCTGAATTGTAGGAAACGGCAAACGAAACGTCCAGCAAAAGTGGAGAAGCCGCCCCCGCCCCCGCCC CCGCCCCCGCCCCCGCCGCCTCCCCCGGAGCTGGCCAGTGGGTCTCGCCTGACCGACAGCAGCAGCAGCA GCGGCAGCGGCAGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCTCCTCGGGGTCCGC GAGCAGCAGCAGCGACTCGAGCTCCTCCGACAGCAGCGATTCTGAACCAGAAATATTTCCTAAATTTACT GGAGTAAAACAGAATGATTTACCTCCAAAAGAAAATATAAAGCAGATACAATCTTCTGTGCAAGACATAA CCTCTGCTGAAGCTCCCCTTGCTCAGCAGAGCACAGCACCATGCGGAGCCCCAGGGAAGCACTCCCAGCA GATGCTTGGTTGCCAAGTGACACAGCATCTGCAGGCCACAGAGAACACTGCATCTGTGCAGACTCAGCCT CTTTCAGGTGATTGCAAGCGAGTATTGCTTGGCCCCCCTGTGGTGCACACCTCTGCTGAGAGCCTCACAG TGCTGGAGCCAGAATGCCATGCTCCCGCGCAGAAGGATATAAAGATTAAGAATGCAGACTCTTGGAAAAG TTTAGGGAAGCCAGTGAAAGCATCAAGTGTACTGAAGTCTTCAGATGAGCTTTTCAACCAGTTTAGAAAA GCTGCAATAGAAAAGGAGGTAAAGGCCCGGACACAGGAGCAGATGCGGAAACACCTGGAGCATAATGCGA AGGACCCAAAAGTATCTCAAGAAAATCAGAGGGAGCCTGGAAGTGGATTGACTCTAGAATCTTTATCAAG TAAAGTGCAAGATAAGTCTCTTGAAGAAGATCAGAGTGAACAGCAGCCACCGTCGGAAGCTCAAGACGTA AGCAAGCTCTGGCTTCTCAAAGACCGGAATCTAGCGAGGGAGAAAGAGCAAGAGCGCAGGAGAAGAGAAG CAATGGCGGGTACCATTGATATGACTCTTCAAAGTGACATTATGACAATGTTTGAAAATAACTTTGATTA A
Translation (956 aa):
MSLPSRQTAIVNPPPPEYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIK TPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEEQVVG GKERIKKDIQQKIAVSSAKEQIPSKAAENVFKRQEIPSGLPDISLSPLNMAQEAPPICDSQSLVQITKGV KRRADTTTPTTSIAKASSESPPTLRETKPVNMPVKENTVKNVLPDSQQQHKVLKTVKVTEQLKHCSEILK EMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKY NPPDHEVVAMARTLQDVFELHFAKIPDEPIESMHACHLTTNSAQALSRESSSEASSGDASSEDSEDERVQ HLAKLQEQLNAVHQQLQVLSQVPLRKLKKKNEKSKRAPKRKKVNNRDENPRKKPKQMKQKEKAKINQPKK KKPLLKSEEEDNAKPMNYDEKRQLSLDINKLPGDKLGRIVHIIQSREPSLRNSNPDEIEIDFETLKASTL RELEKYVLACLRKRSLKPQAKKVVRSKEELHSEKKLELERRLLDVNNQLNCRKRQTKRPAKVEKPPPPPP PPPPPPPPPELASGSRLTDSSSSSGSGSGSSSSSSGSSSSSSSSGSASSSSDSSSSDSSDSEPEIFPKFT GVKQNDLPPKENIKQIQSSVQDITSAEAPLAQQSTAPCGAPGKHSQQMLGCQVTQHLQATENTASVQTQP LSGDCKRVLLGPPVVHTSAESLTVLEPECHAPAQKDIKIKNADSWKSLGKPVKASSVLKSSDELFNQFRK AAIEKEVKARTQEQMRKHLEHNAKDPKVSQENQREPGSGLTLESLSSKVQDKSLEEDQSEQQPPSEAQDV SKLWLLKDRNLAREKEQERRRREAMAGTIDMTLQSDIMTMFENNFD

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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