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Report for CCDS66204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66204.1 Public Homo sapiens 11 C11orf54 24 110 108 CCDS HistoryNCBI Gene:28970Re-query CCDS DB by CCDS ID:66204.1Re-query CCDS DB by GeneID:28970See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331239.8 ENSP00000331209.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331239.8Link to Ensembl Protein Viewer:ENSP00000331209.4Re-query CCDS DB by Nucleotide ID:ENST00000331239Re-query CCDS DB by Protein ID:ENSP00000331209
Original member Current member EBI ENST00000354421.8 ENSP00000346403.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354421.8Link to Ensembl Protein Viewer:ENSP00000346403.3Re-query CCDS DB by Nucleotide ID:ENST00000354421Re-query CCDS DB by Protein ID:ENSP00000346403
Original member Current member EBI ENST00000528099.5 ENSP00000435113.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528099.5Link to Ensembl Protein Viewer:ENSP00000435113.1Re-query CCDS DB by Nucleotide ID:ENST00000528099Re-query CCDS DB by Protein ID:ENSP00000435113
Original member Current member NCBI NM_001286067.2 NP_001272996.1 Accepted alive Link to Nucleotide Sequence:NM_001286067.2Link to Protein Sequence:NP_001272996.1Re-query CCDS DB by Nucleotide ID:NM_001286067Re-query CCDS DB by Protein ID:NP_001272996Link to BLAST:NP_001272996.1
Original member Current member NCBI NM_001286068.2 NP_001272997.1 Accepted alive Link to Nucleotide Sequence:NM_001286068.2Link to Protein Sequence:NP_001272997.1Re-query CCDS DB by Nucleotide ID:NM_001286068Re-query CCDS DB by Protein ID:NP_001272997Link to BLAST:NP_001272997.1
Original member Current member NCBI NM_001286069.2 NP_001272998.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001286069.2Link to Protein Sequence:NP_001272998.1Re-query CCDS DB by Nucleotide ID:NM_001286069Re-query CCDS DB by Protein ID:NP_001272998Link to BLAST:NP_001272998.1
Original member Current member NCBI NM_001351985.2 NP_001338914.1 Accepted alive Link to Nucleotide Sequence:NM_001351985.2Link to Protein Sequence:NP_001338914.1Re-query CCDS DB by Nucleotide ID:NM_001351985Re-query CCDS DB by Protein ID:NP_001338914Link to BLAST:NP_001338914.1
Original member Current member NCBI NM_001351986.2 NP_001338915.1 Accepted alive Link to Nucleotide Sequence:NM_001351986.2Link to Protein Sequence:NP_001338915.1Re-query CCDS DB by Nucleotide ID:NM_001351986Re-query CCDS DB by Protein ID:NP_001338915Link to BLAST:NP_001338915.1
Original member Current member NCBI NM_001351987.2 NP_001338916.1 Accepted alive Link to Nucleotide Sequence:NM_001351987.2Link to Protein Sequence:NP_001338916.1Re-query CCDS DB by Nucleotide ID:NM_001351987Re-query CCDS DB by Protein ID:NP_001338916Link to BLAST:NP_001338916.1
Original member Current member NCBI NM_001351988.2 NP_001338917.1 Accepted alive Link to Nucleotide Sequence:NM_001351988.2Link to Protein Sequence:NP_001338917.1Re-query CCDS DB by Nucleotide ID:NM_001351988Re-query CCDS DB by Protein ID:NP_001338917Link to BLAST:NP_001338917.1
Original member Current member NCBI NM_001351989.2 NP_001338918.1 Accepted alive Link to Nucleotide Sequence:NM_001351989.2Link to Protein Sequence:NP_001338918.1Re-query CCDS DB by Nucleotide ID:NM_001351989Re-query CCDS DB by Protein ID:NP_001338918Link to BLAST:NP_001338918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272996.1 315 Q9H0W9-1 315 100% 0 0
NP_001272997.1 315 Q9H0W9-1 315 100% 0 0
NP_001272998.1 315 Q9H0W9-1 315 100% 0 0
NP_001338914.1 315 Q9H0W9-1 315 100% 0 0
NP_001338915.1 315 Q9H0W9-1 315 100% 0 0
NP_001338916.1 315 Q9H0W9-1 315 100% 0 0
NP_001338917.1 315 Q9H0W9-1 315 100% 0 0
NP_001338918.1 315 Q9H0W9-1 315 100% 0 0

Chromosomal Locations for CCDS 66204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93747394 93747448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93750346 93750444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753682 93753755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753936 93754037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93755210 93755386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93757316 93757465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93759742 93759858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93761515 93761688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCTTGTGCTGAGTTTTCTTTTCATGTACCAAGTCTTGAAGAGCTTGCTGGAGTTATGCAGAAGGGGT
TAAAAGATAACTTTGCTGATGTCCAGGTCTCTGTAGTTGATTGCCCTGATTTGACTAAGGAACCCTTTAC
CTTTCCTGTAAAAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTTACTTATTGCCT
CTTGTAAACCAAAAAAAAGTTTATGATCTGAATAAAATTGCAAAAGAAATCAAGCTGCCTGGAGCCTTTA
TTCTTGGAGCAGGAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGTTTATGCCAGTTATTCAGAC
AGAAAGTGAACACAAGCCTCCTGTAAATGGAAGTTACTTTGCCCATGTGAACCCTGCAGATGGAGGGTGC
CTACTGGAGAAATACAGTGAGAAATGTCATGATTTTCAGTGTGCATTACTGGCTAATCTTTTTGCCAGTG
AAGGCCAACCTGGCAAGGTAATTGAGGTGAAAGCCAAAAGAAGAACTGGACCACTTAACTTTGTGACTTG
TATGAGAGAGACCCTGGAAAAACATTATGGAAATAAGCCTATAGGAATGGGAGGTACTTTCATAATTCAG
AAGGGAAAAGTGAAGTCTCACATTATGCCTGCAGAATTTTCTTCCTGCCCCTTGAACTCTGATGAAGAAG
TGAATAAATGGTTGCATTTTTATGAAATGAAAGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAGAGA
CCCAGGGTTTGATTTGCGACTGGAGCACACTCATTTTTTTAGTCGTCATGGAGAAGGTGGACACTACCAT
TATGACACTACTCCAGATATAGTGGAATATCTTGGATACTTCTTACCTGCAGAGTTTCTCTATCGCATTG
ATCAACCAAAAGAGACGCATTCAATTGGGCGAGATTAA

Translation (315 aa):
MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLP
LVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGC
LLEKYSEKCHDFQCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQ
KGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYH
YDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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