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Report for CCDS36501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36501.1 Public Mus musculus 12 Ngb 23 108 98 CCDS HistoryNCBI Gene:64242Re-query CCDS DB by CCDS ID:36501.1Re-query CCDS DB by GeneID:64242See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021420.13 ENSMUSP00000021420.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021420.13Link to Ensembl Protein Viewer:ENSMUSP00000021420.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021420Re-query CCDS DB by Protein ID:ENSMUSP00000021420
Original member Current member NCBI NM_022414.2 NP_071859.1 Accepted alive Link to Nucleotide Sequence:NM_022414.2Link to Protein Sequence:NP_071859.1Re-query CCDS DB by Nucleotide ID:NM_022414Re-query CCDS DB by Protein ID:NP_071859Link to BLAST:NP_071859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071859.1 151 Q9ER97 151 100% 0 0

Chromosomal Locations for CCDS 36501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87098412 87098546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87099996 87100115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87100689 87100800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87102172 87102260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGAGCGCCCGGAGTCAGAGCTGATCCGGCAGAGCTGGCGGGTAGTGAGCCGCAGCCCTCTGGAACATG
GCACTGTCCTGTTCGCCAGGCTCTTCGCCCTGGAACCCAGCCTGCTGCCTCTCTTCCAGTACAATGGCCG
CCAGTTCTCCAGCCCTGAGGACTGTCTCTCCTCTCCAGAATTCCTGGACCACATTAGGAAGGTGATGCTA
GTGATTGATGCTGCAGTGACCAACGTGGAGGACCTGTCTTCATTGGAGGAGTACCTGACCAGCTTGGGCA
GGAAGCATCGGGCAGTGGGAGTGAGGCTCAGCTCCTTCTCGACAGTAGGCGAGTCCCTGCTCTACATGCT
GGAGAAGTGCCTGGGTCCCGACTTTACACCAGCTACAAGGACCGCCTGGAGCCGACTCTACGGAGCTGTG
GTGCAAGCCATGAGCCGAGGCTGGGATGGGGAGTAA

Translation (151 aa):
MERPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDCLSSPEFLDHIRKVML
VIDAAVTNVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKCLGPDFTPATRTAWSRLYGAV
VQAMSRGWDGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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