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Report for CCDS25103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25103.1 Public Mus musculus 11 Slc13a2 23 108 98 CCDS HistoryNCBI Gene:20500Re-query CCDS DB by CCDS ID:25103.1Re-query CCDS DB by GeneID:20500See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001122.5 ENSMUSP00000001122.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001122.5Link to Ensembl Protein Viewer:ENSMUSP00000001122.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001122Re-query CCDS DB by Protein ID:ENSMUSP00000001122
Original member Current member NCBI NM_022411.4 NP_071856.1 Accepted alive Link to Nucleotide Sequence:NM_022411.4Link to Protein Sequence:NP_071856.1Re-query CCDS DB by Nucleotide ID:NM_022411Re-query CCDS DB by Protein ID:NP_071856Link to BLAST:NP_071856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071856.1 586 Q9ES88 586 100% 0 0

Chromosomal Locations for CCDS 25103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78397688 78397855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78398291 78398428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78399032 78399193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78400084 78400205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78400476 78400564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78400744 78400962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78403072 78403194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78403314 78403485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78404378 78404577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78404671 78404807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78406810 78406938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78422066 78422167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGGCCACCTGCTGGCAGGCACTATGGGCCTATCGCTCCTACCTGATTGTGCTATGTCTGCCCATTTTCC
TGTTGCCTCTGCCACTCATTGTCCAAACTAAGGAAGCCTACTGTGCTTACTCCATCATCCTCATGGCGCT
GCTGTGGTGTACAGAGGCCCTGCCCTTGGCTGTCACCGCCCTCTTCCCCATCATCCTCTTCCCTTTGATG
GGTATCATGGAAGCCTCCAAGGTCTGCTTAGAGTACTTCAAGGACACCAACATATTGTTCGTCGGGGGTC
TGATGGTGGCCATCGCCGTGGAGCACTGGAACCTGCACAAGCGCATTGCCCTTGGAGTGCTCCTTATCAT
AGGAGTGCGGCCCGCCCTGCTGCTTCTGGGCTTCATGTTGGTCACAGCCTTCCTCTCCATGTGGATCAGC
AACACAGCCACCACAGCCATGATGCTGCCCATCGGGTATGCAGTCCTGGAGCAGCTGCAGGGCTCACAAA
AGGATGTGGAGGAAGGCAATAGTAACCCTTCCTTTGAGCTCCAGGAAGCAAGTCCCCAGAAGGAGGAGAC
CAAGCTTGATAACGGTCAGGCTGTATCTGTTTCTTCGGAGCCAAGAGCTCAGAAGACCAAAGAGCATCAC
CGCTTCAGCCAGGGCCTGAGTCTCTGCATCTGCTACTCAGCCAGCATTGGGGGCATTGCCACCCTGACGG
GTACCACACCCAACCTGGTGCTCCAAGGCCAGGTCAACTCGATCTTCCCTGAAAATAGTAACGTGGTGAA
CTTTGCTTCATGGTTTGGTTTTGCCTTCCCCACCATGGTGATCTTGCTGCTACTGGCTTGGCTATGGCTA
CAGGTCCTCTTCCTGGGTGTCAACTTCCGGAAGAACTTTGGCTTTGGGGAAGGGGAAGAGGAACGGAAGC
AGGCTGCCTTCCAGGTCATCAAGACCCAGCACAGGCTGCTGGGCCCCATGAGTTTTGCAGAGAAGGCTGT
CACTTTCCTGTTTGTCCTGCTAGTGGTGCTCTGGTTCACGAGGGAGCCGGGCTTCTTCCCAGGCTGGGGT
GACACAGCTTTCGCCAATAAAAAAGGGCAAAGCATGGTATCAGATGGGACAGTGGCCATCTTTATCAGCC
TGATTATGTTCATCATACCCTCCAAGATTCCAGGACTAACCGAGGACCCAAAAAAACCAGGGAAGCTGAA
GGCTCCTCCTGCCATCCTCACCTGGAAGACAGTGAACGATAAGATGCCCTGGAATATCCTGATCTTGCTG
GGTGGGGGCTTTGCCCTGGCCAAAGGCAGTGAGGAATCAGGTTTGTCTAAGTGGCTGGGAGACAAACTGA
CCCCGCTGCAGCACGTACCGCCATCAGCCACCGTGCTCATCCTCTCTCTATTGGTGGCCATCTTCACTGA
GTGCACCAGCAACGTGGCCACCACTACACTATTTCTGCCCATCCTGGCCTCCATGGCACAGGCCATCTGC
CTTCACCCGCTCTATGTCATGCTTCCCTGCACCCTGGCTGCCTCCCTAGCTTTCATGCTACCCGTGGCCA
CTCCACCCAACGCCATTGTCTTCTCTTTTGGAGGCCTCAAAGTGTCTGATATGGCCCGTGCAGGATTCCT
GCTCAATATCATCGGAGTGCTGACTATCACATTATCCATAAACAGCTGGAGTATCCCTATCTTCAAGCTG
GACACATTTCCCACCTGGGCCTACTCCAACACAAGCCAGTGCCTTCTCAATCCGCCTAATTCCACTGTAC
CAGGCCACTAG

Translation (586 aa):
MATCWQALWAYRSYLIVLCLPIFLLPLPLIVQTKEAYCAYSIILMALLWCTEALPLAVTALFPIILFPLM
GIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLIIGVRPALLLLGFMLVTAFLSMWIS
NTATTAMMLPIGYAVLEQLQGSQKDVEEGNSNPSFELQEASPQKEETKLDNGQAVSVSSEPRAQKTKEHH
RFSQGLSLCICYSASIGGIATLTGTTPNLVLQGQVNSIFPENSNVVNFASWFGFAFPTMVILLLLAWLWL
QVLFLGVNFRKNFGFGEGEEERKQAAFQVIKTQHRLLGPMSFAEKAVTFLFVLLVVLWFTREPGFFPGWG
DTAFANKKGQSMVSDGTVAIFISLIMFIIPSKIPGLTEDPKKPGKLKAPPAILTWKTVNDKMPWNILILL
GGGFALAKGSEESGLSKWLGDKLTPLQHVPPSATVLILSLLVAIFTECTSNVATTTLFLPILASMAQAIC
LHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLTITLSINSWSIPIFKL
DTFPTWAYSNTSQCLLNPPNSTVPGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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