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Report for CCDS40389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40389.1 Public Mus musculus 8 Cherp 23 108 98 CCDS HistoryNCBI Gene:27967Re-query CCDS DB by CCDS ID:40389.1Re-query CCDS DB by GeneID:27967See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212991.1 ENSMUSP00000148273.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212991.1Link to Ensembl Protein Viewer:ENSMUSP00000148273.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212991Re-query CCDS DB by Protein ID:ENSMUSP00000148273
Original member Current member NCBI NM_138585.3 NP_613051.3 Accepted alive Link to Nucleotide Sequence:NM_138585.3Link to Protein Sequence:NP_613051.3Re-query CCDS DB by Nucleotide ID:NM_138585Re-query CCDS DB by Protein ID:NP_613051Link to BLAST:NP_613051.3

Chromosomal Locations for CCDS 40389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72461315 72461355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72461436 72461621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72461749 72461843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72461980 72462102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72462177 72462320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72462404 72462490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72462801 72462934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72463078 72463316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72464084 72464519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72466383 72466558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72467763 72468042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72468200 72468289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72468375 72468486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72469864 72470015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72470090 72470227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72470871 72471055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72474612 72474785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72475058 72475082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGGAGATGCCGATGCCGCCAGATGATCAGGAGCTTCGAAATGTCATCGATAAGCTCGCTCAGTTTGTGG
CTCGCAACGGACCCGAGTTCGAGAAAATGACGATGGAGAAGCAGAAGGACAACCCTAAGTTCTCGTTTCT
GTTTGGAGGCGAGTTCTACAGTTACTACAAGTGCAAGCTGGCACTGGAGCAGCAACAGCTAATCTGCAAG
CAGCAGGCCCCAGAGCTGGAGCCCACCTCAGCCATGCCCCCTCTGCCACAACCTCCGCTGGCTCCCACAG
CGTCCCTCACTCCGGCCCAGGGCACCCCATCAATGGACGAGCTCATCCAACAGAGCCAGTGGAGTCTCCA
GCAGCAGGAACAGCACCTGCTGGCCCTGCGCCAGGAGCAAGTAACGACAGCCGTGGCACATGCAGTGGAA
CAGCAAATGCAGAAGCTGCTGGAAGAGACACAACTGGACATGAGCGAGTTTGACAACCTGCTACAGCCCA
TCATTGACACCTGCACAAAGGATGCCATCTCGGCTGGGAAGAACTGGATGTTCAGCAATGCTAAGTCCCC
ACCACACTGTGAGCTGATGGCAGGCCACCTGCGCAACCGCATCACTGCTGATGGCGCACACTTCGAGCTG
CGGCTACACCTCATCTATCTGATCAATGACGTGCTGCACCACTGCCAGCGCAAGCAGGCCCGGGAGCTGC
TGGCTGCCTTGCAGAAGGTGGTAGTACCCATCTATTGCACCAGCTTCCTGGCTGTGGAGGAGGACAAACA
GCAGAAGATTGCCCGGCTCCTGCAGCTCTGGGAAAAGAACGGCTACTTTGATGACTCCATCATTCAGCAA
CTGCAGAGCCCTGCCCTGGGACTTGGTCAGTATCAGGCGACTCTCATCAATGAGTACTCGTCAGTGGTGC
AGCCTGTGCAGCTGGCCTTCCAGCAGCAGATCCAGAGCCTCAAGACACAGCATGAAGAGTTCGTCAGCAG
CTTAGCCCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCCGCAGCCACAGCCACAGCCACAG
ATTCAGCTGCCTCAGATGGAAGCAGATGTGAAGGCCACACCCCCACCACCAGCACCACCACCAGCCTCAG
CACCTGCCCCCACCATCCCACCAACTACCCAGCCAGATGACAACAAGCCTCCCATCCAGATGCCTGGCTC
TTCAGAGTACGACACCTCTGCAGGTGTCCAGGATCCTGCAGCTGCTGGCCCTCGAGGTCCTGGCCCCCAT
GAGCAGATCCCGCCAAACAAGCCCCCTTGGTTTGATCAGCCTCACCCAGTTGCCCCTTGGGGTCAACAGC
AGCCCCCTGAGCAACCCCCATACCCACACCACCAAGGTGGACCACCCCATTGCCCACCCTGGAACAACAG
CCACGAGGGCATGTGGGGTGAGCAGCGAGGGGACCCTGGCTGGAATGGGCAGCGAGATGCTCCGTGGAAC
AACCAGCCAGATCCCAATTGGAATAACCAGTTTGAAGGACCATGGAACAATCAGCATGAGCCACCGCCCT
GGGGTGGTGCCCAGCGGGAGCCGCCCTTCAGAATGCAGCGGCCCCCCCACTTCCGTGGGCCGTTCCCACC
CCACCAGCAGCACCCACAGTTCAACCAGCCTCCACATCCCCACAACTTCAACCGGTTCCCACCCCGCTTC
ATGCAGGATGACTTCCCACCTCGTCACCCTTTTGAGCGGCCACCCTACCCTCACCGCTTTGACTATCCCC
AGGGAGACTTTCCTGCAGACATGGGACCCCCTCATCACCACCCTGGCCACCGAATGCCACACCCTGGGAT
CAATGAGCACCCACCTTGGGCTGGGCCCCAGCACCCTGACTTTGGCCCTCCTCCCCACGGCTTCAATGGC
CAGCCTCCCCACATGCGGCGACAGGGCCCACCTCACATCAACCATGATGACCCCAGCCTAGTCCCCAATG
TGCCCTACTTCGATCTTCCAGCGGGGTTAATGGCCCCCCTTGTGAAGCTGGAGGATCATGAGTACAAGCC
TCTGGACCCCAAAGACATCCGCCTGCCACCCCCCATGCCTCCCAGTGAGAGGCTACTCGCAGCTGTGGAG
GCCTTCTACAGTCCGCCCTCCCATGACAGGCCAAGGAACAGTGAGGGCTGGGAGCAGAATGGCCTCTATG
AGTTCTTTCGAGCCAAGATGCGAGCACGGCGGCGCAAGGGCCAGGAGAAGAGAAACAGCGGCCCCTCCAG
ATCACGCAGCCGGTCCAAAAGCCGAGGCCGCTCCTCATCTCGCTCCAGCTCCCGATCCTCCAAGTCCTCA
CGTTCCTCCTCCCGCTCACATTCCCGGTCTCGGTCCCGCTCCTCCTCTCGCTCCAGGTCCAGAAGCCGCA
GCCGGTCACGTTCCTCCAGAAGCCGCTCGCGCTCCAGGTCCAGGTCCAGGTCCAGGTCCAAGTCATACTC
CCCTGGGAGGCGGCGACGCTCCAGGTCCCGGAGCCCCACCCCACCCTCTGCAGCTGGCCTGGGTTCTAAT
TCAGCGCCTCCCATACCAGACTCGAGGCTTGGAGAAGAGAATAAAGGCCATCAAATGCTGGTGAAGATGG
GCTGGAGCGGGTCTGGTGGCCTTGGTGCAAAGGAACAGGGCATTCAGGATCCCATTAAGGGTGGTGACGT
CCGGGATAAATGGGACCAGTACAAGGGCGTGGGTGTGGCCCTGGACGACCCTTATGAGAACTACCGCCGC
AACAAGAGCTACTCCTTCATTGCCCGCATGAAAGCCCGAGATGAGTTTTCCACATTTGGGACTCGAAAAG
AAGAGAAGGAAGACTGA

Translation (938 aa):
MEMPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICK
QQAPELEPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTTAVAHAVE
QQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFEL
RLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQ
LQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQQQPQPQPQPQ
IQLPQMEADVKATPPPPAPPPASAPAPTIPPTTQPDDNKPPIQMPGSSEYDTSAGVQDPAAAGPRGPGPH
EQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWN
NQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRF
MQDDFPPRHPFERPPYPHRFDYPQGDFPADMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNG
QPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVE
AFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSS
RSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSN
SAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRR
NKSYSFIARMKARDEFSTFGTRKEEKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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