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Report for CCDS24097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24097.1 Public Mus musculus 10 Timp3 23 108 98 CCDS HistoryNCBI Gene:21859Re-query CCDS DB by CCDS ID:24097.1Re-query CCDS DB by GeneID:21859See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020234.13 ENSMUSP00000020234.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020234.13Link to Ensembl Protein Viewer:ENSMUSP00000020234.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020234Re-query CCDS DB by Protein ID:ENSMUSP00000020234
Original member Current member NCBI NM_011595.2 NP_035725.1 Accepted alive Link to Nucleotide Sequence:NM_011595.2Link to Protein Sequence:NP_035725.1Re-query CCDS DB by Nucleotide ID:NM_011595Re-query CCDS DB by Protein ID:NP_035725Link to BLAST:NP_035725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035725.1 211 P39876 211 100% 0 0

Chromosomal Locations for CCDS 24097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86300854 86300974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86338373 86338455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86343933 86344044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86344554 86344675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86345705 86345902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGACTCCCTGGCTTGGGCTTGTCGTGCTCCTGAGCTGCTGGAGCCTTGGGCACTGGGGCGCGGAAGCGT
GCACATGCTCTCCCAGCCATCCCCAGGATGCCTTCTGCAACTCCGACATCGTGATCCGGGCCAAAGTGGT
GGGAAAGAAGCTGGTGAAGGAGGGGCCCTTTGGCACTCTGGTCTACACTATTAAGCAGATGAAGATGTAC
CGAGGCTTCAGTAAGATGCCCCACGTGCAGTACATTCACACGGAAGCCTCTGAAAGTCTTTGTGGCCTCA
AGCTAGAAGTCAACAAATACCAGTACCTGCTGACAGGGCGCGTGTATGAAGGCAAGATGTACACAGGACT
GTGCAACTTTGTGGAGAGGTGGGACCACCTCACACTGTCCCAGCGCAAGGGCCTCAATTACCGCTACCAC
CTGGGTTGCAATTGCAAGATCAAGTCCTGCTACTACTTGCCTTGTTTTGTGACCTCCAAGAATGAGTGTC
TCTGGACCGACATGCTCTCCAATTTTGGGTACCCTGGCTATCAGTCCAAACACTACGCCTGCATCCGGCA
GAAGGGTGGCTACTGCAGCTGGTACCGAGGATGGGCTCCCCCAGACAAGAGCATCAGCAACGCCACAGAC
CCCTGA

Translation (211 aa):
MTPWLGLVVLLSCWSLGHWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFGTLVYTIKQMKMY
RGFSKMPHVQYIHTEASESLCGLKLEVNKYQYLLTGRVYEGKMYTGLCNFVERWDHLTLSQRKGLNYRYH
LGCNCKIKSCYYLPCFVTSKNECLWTDMLSNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSISNATD
P


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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