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Report for CCDS44862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44862.1 Public Homo sapiens 12 IRAK4 24 110 108 CCDS HistoryNCBI Gene:51135Re-query CCDS DB by CCDS ID:44862.1Re-query CCDS DB by GeneID:51135See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440781.6 ENSP00000408734.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440781.6Link to Ensembl Protein Viewer:ENSP00000408734.2Re-query CCDS DB by Nucleotide ID:ENST00000440781Re-query CCDS DB by Protein ID:ENSP00000408734
Original member Current member NCBI NM_001145256.2 NP_001138728.1 Accepted alive Link to Nucleotide Sequence:NM_001145256.2Link to Protein Sequence:NP_001138728.1Re-query CCDS DB by Nucleotide ID:NM_001145256Re-query CCDS DB by Protein ID:NP_001138728Link to BLAST:NP_001138728.1
Original member Current member NCBI NM_001145257.2 NP_001138729.1 Accepted alive Link to Nucleotide Sequence:NM_001145257.2Link to Protein Sequence:NP_001138729.1Re-query CCDS DB by Nucleotide ID:NM_001145257Re-query CCDS DB by Protein ID:NP_001138729Link to BLAST:NP_001138729.1
Original member Current member NCBI NM_001145258.2 NP_001138730.1 Accepted alive Link to Nucleotide Sequence:NM_001145258.2Link to Protein Sequence:NP_001138730.1Re-query CCDS DB by Nucleotide ID:NM_001145258Re-query CCDS DB by Protein ID:NP_001138730Link to BLAST:NP_001138730.1
Original member Current member NCBI NM_001351338.2 NP_001338267.1 Accepted alive Link to Nucleotide Sequence:NM_001351338.2Link to Protein Sequence:NP_001338267.1Re-query CCDS DB by Nucleotide ID:NM_001351338Re-query CCDS DB by Protein ID:NP_001338267Link to BLAST:NP_001338267.1
Original member Current member NCBI NM_001351339.2 NP_001338268.1 Accepted alive Link to Nucleotide Sequence:NM_001351339.2Link to Protein Sequence:NP_001338268.1Re-query CCDS DB by Nucleotide ID:NM_001351339Re-query CCDS DB by Protein ID:NP_001338268Link to BLAST:NP_001338268.1
Original member Current member NCBI NM_001351340.2 NP_001338269.1 Accepted alive Link to Nucleotide Sequence:NM_001351340.2Link to Protein Sequence:NP_001338269.1Re-query CCDS DB by Nucleotide ID:NM_001351340Re-query CCDS DB by Protein ID:NP_001338269Link to BLAST:NP_001338269.1
Original member Current member NCBI NM_001351341.2 NP_001338270.1 Accepted alive Link to Nucleotide Sequence:NM_001351341.2Link to Protein Sequence:NP_001338270.1Re-query CCDS DB by Nucleotide ID:NM_001351341Re-query CCDS DB by Protein ID:NP_001338270Link to BLAST:NP_001338270.1
Original member Current member NCBI NM_001351342.2 NP_001338271.1 Accepted alive Link to Nucleotide Sequence:NM_001351342.2Link to Protein Sequence:NP_001338271.1Re-query CCDS DB by Nucleotide ID:NM_001351342Re-query CCDS DB by Protein ID:NP_001338271Link to BLAST:NP_001338271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138728.1 336 Q9NWZ3-2 336 100% 0 0
NP_001138729.1 336 Q9NWZ3-2 336 100% 0 0
NP_001138730.1 336 Q9NWZ3-2 336 100% 0 0
NP_001338267.1 336 Q9NWZ3-2 336 100% 0 0
NP_001338268.1 336 Q9NWZ3-2 336 100% 0 0
NP_001338269.1 336 Q9NWZ3-2 336 100% 0 0
NP_001338270.1 336 Q9NWZ3-2 336 100% 0 0
NP_001338271.1 336 Q9NWZ3-2 336 100% 0 0

Chromosomal Locations for CCDS 44862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 43772245 43772362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43772912 43773072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43773965 43774029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43777630 43777744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43778193 43778302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43782307 43782490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43783662 43783724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43786399 43786557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 43786680 43786715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCCTTTCTGTGACAAAGACAGGACATTGATGACACCTGTGCAGAATCTTGAACAAAGCTATATGCCAC
CTGACTCCTCAAGTCCAGAAAATAAAAGTTTAGAAGTTAGTGATACACGTTTTCACAGTTTTTCATTTTA
TGAATTGAAGAATGTCACAAATAACTTTGATGAACGACCCATTTCTGTTGGTGGTAATAAAATGGGAGAG
GGAGGATTTGGAGTTGTATATAAAGGCTACGTAAATAACACAACTGTGGCAGTGAAGAAGCTTGCAGCAA
TGGTTGACATTACTACTGAAGAACTGAAACAGCAGTTTGATCAAGAAATAAAAGTAATGGCAAAGTGTCA
ACATGAAAACTTAGTAGAACTACTTGGTTTCTCAAGTGATGGAGATGACCTCTGCTTAGTATATGTTTAC
ATGCCTAATGGTTCATTGCTAGACAGACTCTCTTGCTTGGATGGTACTCCACCACTTTCTTGGCACATGA
GATGCAAGATTGCTCAGGGTGCAGCTAATGGCATCAATTTTCTACATGAAAATCATCATATTCATAGAGA
TATTAAAAGTGCAAATATCTTACTGGATGAAGCTTTTACTGCTAAAATATCTGACTTTGGCCTTGCACGG
GCTTCTGAGAAGTTTGCCCAGACAGTCATGACTAGCAGAATTGTGGGAACAACAGCTTATATGGCACCAG
AAGCTTTGCGTGGAGAAATAACACCCAAATCTGATATTTACAGCTTTGGTGTGGTTTTACTAGAAATAAT
AACTGGACTTCCAGCTGTGGATGAACACCGTGAACCTCAGTTATTGCTAGATATTAAAGAAGAAATTGAA
GATGAAGAAAAGACAATTGAAGATTATATTGATAAAAAGATGAATGATGCTGATTCCACTTCAGTTGAAG
CTATGTACTCTGTTGCTAGTCAATGTCTGCATGAAAAGAAAAATAAGAGACCAGACATTAAGAAGGTTCA
ACAGCTGCTGCAAGAGATGACAGCTTCTTAA

Translation (336 aa):
MPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGE
GGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVY
MPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR
ASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE
DEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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