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Report for CCDS36387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36387.1 Public Mus musculus 11 Tepsin 23 108 98 CCDS HistoryNCBI Gene:78777Re-query CCDS DB by CCDS ID:36387.1Re-query CCDS DB by GeneID:78777See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093901.11 ENSMUSP00000091428.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093901.11Link to Ensembl Protein Viewer:ENSMUSP00000091428.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093901Re-query CCDS DB by Protein ID:ENSMUSP00000091428
Original member Current member NCBI NM_183137.2 NP_898960.2 Accepted alive Link to Nucleotide Sequence:NM_183137.2Link to Protein Sequence:NP_898960.2Re-query CCDS DB by Nucleotide ID:NM_183137Re-query CCDS DB by Protein ID:NP_898960Link to BLAST:NP_898960.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898960.2 573 Q3U3N6 573 100% 0 0

Chromosomal Locations for CCDS 36387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120091521 120092012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120092851 120092985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120093245 120093323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120093417 120093530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120093691 120093865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120094114 120094317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120095344 120095415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120095534 120095609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120095804 120095871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120096581 120096674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120096878 120096969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120097509 120097581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120098626 120098673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGCAGCTGTGCCGCCCCTGCGGGACCGCTTGAGCTTCTTGCATAGGCTCCCCATCCTGTTGAAGGGGA
CCTCAGATGATAGCATCCCATGTCCAGGCTACCTGTTTGAAGAGATCGCCAAGATTTCCCACGAGTCACT
AGGCAGCAGCCAGTGCCTGCTGGAGTACCTCCTGAACCGTCTGGACAGCAGCTCCGGCCACGTGAAGCTC
AAGGTGCTAAAGATCTTGCTTTACCTGTGTGGTCATGGCTCTTCCTCCTTCCTCCTCATCCTCAGGAGAA
ACTCTGCTCTCATCCAAGAAGCCACGGCTTTCTCAGGGCCTCCAGATCCTCTTCACGGAAATAGCTTGTA
CCAGAAGGTGCGGGCGGCTGCCCAGGACCTGGGTAGCACCCTGTTCTCAGATGCCGTGCCACAGCCTCCA
TCGCAGCCACCTCAGATCCCGCCTCCCGCAGGCATGGGCGCCCAGGCCAGACCTCTTAGTGCCCTGCAAG
GCTTCGGCTACACGAAGGAGAGCAGCCGGACAGGCTCCGCAGGTGAAACCTTCCTCTCCACCATCCAGAG
GGCCGCAGAGGTAGTGGCTAATGCTGTGCGTCCTGGACCTGATAATCCTTGTACCAAGGGACCCTTGCCG
TATGGTGATTCCTACCAGCCTGCAGTGACACCTTCAGCTAGCCACACACATCCCAACCCTGGGAATCTAC
TCCCTGGGGCCATCCTGGGGGCCAGAGCTGTGAGACACCAGCCCGGGCAGGCTGGGGGCGGCTGGGATGA
GCTGGACAGCAGTCCTAGTTCCCAGAATTCCTCCTGCACCAGCAACCTGAGCAGGGCCTCGGACTCGGGC
AGTCGGTCTGGCAGTGACAGCCACTCTGGCACCAGCCGGGAGCCAGGCGACCTGGCAGAAAGGGCTGAGG
CCACGCCCCCAAATGACTGCCAGCAAGAACTGAATCTAGTGAGGACTGTGACACAGGGGCCACGTGTCTT
CCTGAGCCGTGAGGAGACGCAGCACTTCATCAAAGAGTGTGGCCTGCTCAACTGTGAGGCAGTGCTGGAG
CTGCTCCTGCGCCAGCTGGTCGGGACCAGTGAGTGCGAGCAGATGAGGGCGCTGTGTGCCATCGCGTCCT
TTGGGAGTGCTGACCTCCTGCCTCAGGAGCACGTCCTCCTCCTGTGCCGACAGCAGCTGCAGGAACTTGG
CGCGGGCAGCCCTGGACCTGTGACCAACAAAGCCACCAAGATCCTGAGACATTTTGAAGCCTCCTGTGGA
CAACAGCTCCCTACCCTAAGGCTCTGTGCCCAGCCCAACTCTGCAGCTGCCCCTGTGGGCCCAGCTGACC
TGCTGACCAGCCCCGTGCCTGCCCCTGGGAGCCAGGTCTTCCTCCAGCCTCTCAGCTCCGCCACAGTGGT
ACCCAGGAGTCCTGTGCTCTTTCCATCCCCCAATACCTTACCTCCGTCTGCTCTGGAGGAGCCCAGCGAG
GTCCGAACCCAATTGGTGTGTTCTAGTGAACAGGGGACAGAATCTGAGCAGAGGCTGGAGAACACAGACA
CCCCAGAGGATAGCTCCAGTCCGCTCCCGTGGAGTCCCAACTCTTTGTTTGCTGGCATGGAGCTGGTGGC
TTGCCCCCGCCTGCCTTGCCACAGCTCGCAGGACCTCCAGACAGATTTACAGAAGGTGACCACAGAAGCT
CCGGTTTCAGAGCCATCAGCTTTTGCATTTTTAAACATGTGA

Translation (573 aa):
MAAVPPLRDRLSFLHRLPILLKGTSDDSIPCPGYLFEEIAKISHESLGSSQCLLEYLLNRLDSSSGHVKL
KVLKILLYLCGHGSSSFLLILRRNSALIQEATAFSGPPDPLHGNSLYQKVRAAAQDLGSTLFSDAVPQPP
SQPPQIPPPAGMGAQARPLSALQGFGYTKESSRTGSAGETFLSTIQRAAEVVANAVRPGPDNPCTKGPLP
YGDSYQPAVTPSASHTHPNPGNLLPGAILGARAVRHQPGQAGGGWDELDSSPSSQNSSCTSNLSRASDSG
SRSGSDSHSGTSREPGDLAERAEATPPNDCQQELNLVRTVTQGPRVFLSREETQHFIKECGLLNCEAVLE
LLLRQLVGTSECEQMRALCAIASFGSADLLPQEHVLLLCRQQLQELGAGSPGPVTNKATKILRHFEASCG
QQLPTLRLCAQPNSAAAPVGPADLLTSPVPAPGSQVFLQPLSSATVVPRSPVLFPSPNTLPPSALEEPSE
VRTQLVCSSEQGTESEQRLENTDTPEDSSSPLPWSPNSLFAGMELVACPRLPCHSSQDLQTDLQKVTTEA
PVSEPSAFAFLNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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