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Report for CCDS29191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29191.1 Public Mus musculus 18 Pcdhga12 23 108 98 CCDS HistoryNCBI Gene:93724Re-query CCDS DB by CCDS ID:29191.1Re-query CCDS DB by GeneID:93724See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29191.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044851.7 ENSMUSP00000036359.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044851.7Link to Ensembl Protein Viewer:ENSMUSP00000036359.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044851Re-query CCDS DB by Protein ID:ENSMUSP00000036359
Original member Current member NCBI NM_033595.4 NP_291073.1 Accepted alive Link to Nucleotide Sequence:NM_033595.4Link to Protein Sequence:NP_291073.1Re-query CCDS DB by Nucleotide ID:NM_033595Re-query CCDS DB by Protein ID:NP_291073Link to BLAST:NP_291073.1

Chromosomal Locations for CCDS 29191.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37766117 37768540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGATCCCCATGCAACGGCGGGAGGACTGCAAAGGGCTGGTCTTCCTGGGAGTCCTCCTCGGGATGCTGT
GGAAAGCTGGATCCACCCAGATACGCTATTCGGTTCCCGAGGAGCTGGAGAAAGGATCTAGGGTGGGCAA
CATCTCCAAGGATCTGGGGCTGGAGCCCCGCGAGCTGGAGAAGCGAGGGGTCCGCATCGTCTCCAGAGGT
AGGGCTCAACTTTTCGCTCTAAACCCTCGAAGCGGCAGCCTGGTCACCGCGGGCAGGATAGACCGGGAGG
AGCTGTGTATGGGGTCCATCAAGTGTCAGTTAAATCTAGAGATTCTGATGGAAGATATAGGGAAAATATA
CGGAGTAGAAATAGAAGTGAGGGACATTAACGACAACGCTCCCTACTTCCGTGAAAGTGAATTAGAAATA
AAAATGAGCGAAAACGCCGCCGCTGGGATGCGGTTCCCTCTTCCCCACGCTTGGGATCCAGATATCGGGA
AGAACTCGCTTCAGAGCTACCAGCTCAGCCCGAATGCTCACTTCTCACTGGAGGTGCAGAACGGAGCTGA
TGGTAACAAGTACCCAGAATTGGTGCTGGAGAGCTCGCTGGATCGGGAGGAAAAGGCCGCTCATCTCCTA
GTCCTCACCGCTTCCGACGCGGGAGACCCGGTTCGCACTGGCACAGCGCGCATCCGCGTGATGGTTGTGG
ATGCGAACGACAACGCACCTGCGTTTGCTCGGTCCGAGTACCGCGTGAGCGTGCGGGAGAACGTGGCTGT
GGGCACTCAGCTGCTGCTGGTCAACGCCACCGACCCAGACGAAGGCGCCAATGCGGAAGTGATCTATTCC
TTCCGGTACGTGGACGACAAGGCAGCGAAAGTTTTCAAGCTGGACAGTAACTTGGGGACAATATCAACAA
TAGGGGAGCTGAATCATGAAGAATCGGGGTTCTACGAGATGGAGGTGCAAGCTACAGATAACGCGGGATA
TTCTGCACGGGCCAAGGTCCTGGTCACAGTTCTGGACGTGAACGACAATGCCCCTGAAGTAGCCATCACG
TCCCTCACCAACTCTGTCCCAGAAAACTCTCCCCAAGGGACATTAATAGCACTTTTAAACGTAAATGATC
AAGATTCTGGGGAAAATGGACAGGTAATCTGTTCCATCCAAGAGAATCTGCCCTTTAAGTTAGAAAAGTC
TTACGGAAACTATTATAGATTAGTCACAGATGCAGTCCTGGACCGAGAAGAGGTTCCTAGTTACAACATC
ACAATGACCGCCACTGACAGGGGAAGTCCGCCCCTGACAACAGAAACTCACCTCGCACTGGACATAGCAG
ACACGAACGATAACTCGCCCGTTTTCCTTCAGGCCTCATACTGGGCCTACATCCCAGAGAATAACCCTAG
AGGGGCCTCTATCGCATCCGTGACCGCCCACGACCCCGACAGTGACAAAAATGCCCAAGTCACTTACTCC
CTAGCTGAGGACACCCACCAGGGCGTGCCCCTTTCCTCTTACGTTTCCATCAACTCGGACACTGGTGTCC
TGTACGCACTGCATTCCTTTGACTACGAGCAGTTCCCAGACCTACAACTGCAAGTGATAGCGCGTGACAG
CGGGGACCCGCCACTCAGCAGCAACGTGTCACTGAGCTTGTTCGTGCTGGATCAGAATGACAACGTCCCC
GAAATCTTGTACCCCACTCTCCCTACCGACGGTTCTACTGGAGTGGAGCTAGCACCCCGCTCAGCAGAGC
CTGGCTATCTGGTGACAAAGGTGGTGGCAGTGGACAGAGACTCAGGACAGAACGCCTGGCTGTCCTACCG
TCTGCTAAAGGCCAGCGAGCCAGGGCTCTTCTCCGTGGGGCTGCACACGGGCGAGATAAGCACGGCTCGG
GCCCTGATGGACAGAGATGCTCTCAAACAGAACCTCGTAGTGTCTGTGCAGGACCACGGCCAGCCTCCTC
TCTCTGCCACTGTCACGCTCACTGTGGCGATCGCCGACAGCATCCCCGACGTCCTGGCAGATCTAGACAA
TCTAGAATCTCCTTCCACCTCCGAAACTTCAGGGCTCACTCTCTATCTGGTGGTGGCCGTGGCGGCGGTC
TCCACCGTCTTCCTGGTCTTTGTTCTGGTGCTGCTGGCGCTCAGGCTGCGGCGCTGGCACTCACTGCGCC
TGCTCCGGGCTGGGGGACCCGGATTGGCTGACGTTGCAGCCTCTCACTTTGTGGGCGTAGACGGAGTGCA
AGCTTTCTTGCAGACTTATTCGCACGAGGTCTCGCTCACTGCGGGCTCCCGAAAGAGTCACTTGATTTTC
CCGCAGCCCAACTATGCAGACACGCTCATCAGCCAGGAGAGCTGCGAGAAAACCGAGCCTCTTTTACCAT
CGGGTGATTCGGTTTTTTCTAAAGACAATCATGCATTAAATCAGCAAGCCCCGCCCAACACTGACTGGCG
TTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAAC
AACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCT
CTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCA
CGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAA
CGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (932 aa):
MIPMQRREDCKGLVFLGVLLGMLWKAGSTQIRYSVPEELEKGSRVGNISKDLGLEPRELEKRGVRIVSRG
RAQLFALNPRSGSLVTAGRIDREELCMGSIKCQLNLEILMEDIGKIYGVEIEVRDINDNAPYFRESELEI
KMSENAAAGMRFPLPHAWDPDIGKNSLQSYQLSPNAHFSLEVQNGADGNKYPELVLESSLDREEKAAHLL
VLTASDAGDPVRTGTARIRVMVVDANDNAPAFARSEYRVSVRENVAVGTQLLLVNATDPDEGANAEVIYS
FRYVDDKAAKVFKLDSNLGTISTIGELNHEESGFYEMEVQATDNAGYSARAKVLVTVLDVNDNAPEVAIT
SLTNSVPENSPQGTLIALLNVNDQDSGENGQVICSIQENLPFKLEKSYGNYYRLVTDAVLDREEVPSYNI
TMTATDRGSPPLTTETHLALDIADTNDNSPVFLQASYWAYIPENNPRGASIASVTAHDPDSDKNAQVTYS
LAEDTHQGVPLSSYVSINSDTGVLYALHSFDYEQFPDLQLQVIARDSGDPPLSSNVSLSLFVLDQNDNVP
EILYPTLPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEISTAR
ALMDRDALKQNLVVSVQDHGQPPLSATVTLTVAIADSIPDVLADLDNLESPSTSETSGLTLYLVVAVAAV
STVFLVFVLVLLALRLRRWHSLRLLRAGGPGLADVAASHFVGVDGVQAFLQTYSHEVSLTAGSRKSHLIF
PQPNYADTLISQESCEKTEPLLPSGDSVFSKDNHALNQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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