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Report for CCDS29194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29194.1 Public Mus musculus 18 Pcdhgc5 23 108 98 CCDS HistoryNCBI Gene:93708Re-query CCDS DB by CCDS ID:29194.1Re-query CCDS DB by GeneID:93708See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055935.10 ENSMUSP00000060949.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055935.10Link to Ensembl Protein Viewer:ENSMUSP00000060949.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055935Re-query CCDS DB by Protein ID:ENSMUSP00000060949
Original member Current member NCBI NM_033583.3 NP_291061.1 Accepted alive Link to Nucleotide Sequence:NM_033583.3Link to Protein Sequence:NP_291061.1Re-query CCDS DB by Nucleotide ID:NM_033583Re-query CCDS DB by Protein ID:NP_291061Link to BLAST:NP_291061.1

Chromosomal Locations for CCDS 29194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37819675 37822134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2835 nt):
ATGAGGCCTATGGCATCACCACAGGTCGCTGGGAAATGGCAAGTGCTGTGTATGTTGTCCTTGTGCTGCT
GTGGCTGGGTGTCTGGGCAGCTTCGGTATTCAGTGGTGGAGGAGTCTGAGCCGGGGACTTTGGTGGGGAA
CGTTGCTCAAGATCTGGGCTTAAAGGGGACAGATCTATTGAGCCGCAGGCTGAGATTGGGCTCTGAGGAG
AATGGGCGCTATTTTTCCCTGAGTTTGGTGAGCGGAGCTTTGGCAGTGAGTCAGAAAATTGACCGAGAGA
GCCTGTGCGGAGCCAGCACTAGCTGCCTGCTGCCTGTACAGGTGGTAACTGAACACCCACTGGAGCTCAC
CCGGGTAGAGGTAGAGATCCTGGACCTCAATGACAACTCTCCCAGCTTTGCCACTCCTGATCGAGAGATG
CGCATCTCGGAATCAGCTGCACCTGGAGCCAGGTTCCCACTGGATAGTGCCCAAGACCCAGATGTGGGCA
CCAATACTGTGAGCTTTTATACTCTCAGCCCCAACAGCCACTTCTCTCTGCATGTGAAGACCCTAAAAGA
TGGAAAGCTCTTCCCAGAGCTAGTGCTAGAGCAACAGCTAGACCGTGAGACCCAGGCAAGACATCAGCTA
GTACTCACTGCCGTGGATGGGGGAACCCCAGCCCGCTCAGGGACCAGCCTTATCTCGGTCATTGTGCTGG
ACGTCAATGATAATGCCCCAACCTTCCAGTCCTCGGTTCTACGTGTGGGACTCCCAGAGAACACACCCCC
GGGTACACTGCTGCTCCGTCTCAATGCCACTGATCCAGACGAGGGCACCAATGGCCAACTAGACTACTCT
TTTGGAGACCATACATCTGAAACAGTGAAGAATCTCTTTGGCCTGGATCCTAGCAGTGGAGCAATCCATG
TGTTGGGTCCAGTAGATTTTGAGGAATCAAATTTCTATGAAATTCATGCAAGAGCTCGAGACCAGGGACA
GCCAGCCATGGAGGGCCACTGTGTAATTCAAGTAGATGTAGGGGATGCTAACGACAACCCCCCTGAAGTG
CTGCTGGCATCTTTGGTCAACCCTGTGCTAGAGAGCACACCCGTAGGCACGGTTGTGGGGTTGTTTAATG
TGCGGGACCGAGACTCAGGTAGAAATGGTGAGGTGAGCCTGAAGACATCTCCAAACCTGCCATTTCAGAT
CAAGCCTTCTGAGAACCACTACTCACTGCTCACCAGCCAGCCTCTGGACCGAGAGGCCACATCCCATTAT
ACCATCGAGCTGCTGGCCAGTGATGCTGGATCACCCCCCCTACATACCCATCTCACCCTCAGGCTGAACA
TTTCAGACGTTAATGATAACGCACCCCATTTCACCCAACAGCTCTACACTGCTTATATCCCAGAAAACCG
CCCACCAGGCTCTCTCCTCTGTACTGTGGCTGCCTCTGATCCAGACGAGGGGGATAATGCCCGCCTCACC
TATTCTATTGTGGGGAGTCAAATCCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCCGAGGATG
GACGAATCTTTGCCCAGCGGACCTTTGACTATGAGTTACTGCAGATGCTGCAAATCGTGGTGGGGGTCCG
TGATTCCGGCTCTCCCCGACTGCATGCTAACACATCTCTCCATGTGTTTGTCCTCGATCAGAATGATAAT
GCCCCAGCTGTGCTGCACCCACGACCTGGCAGGGAGTTCTCAGCCCCTCAGCGTCTCCCCCGATCTGCTC
CTCCTGGTTCTTTGGTCACCAAGGTGACAGCCGTGGATGCTGACGCTGGTCACAATGCATGGCTCTCTTA
CTCTCTCTTACCACAGTCCACAGCCCCCGGACTGTTCCTTGTATCTGCACACACTGGTGAGGTGCGCACA
GCCCGGGCCTTATTGGAGGATGACTCTGATACCCAACAGGTGGTGGTCCTGGTGAGGGATAATGGTGACC
CTTCACTATCCTCCACAGCAACAGTACTGCTGGTTCTGGAGGACGAGGATGCAGAGGAAATGCCCAAATC
CAGTGACTTCCTCACACACCCTCCTGAGCGGTCAGACCTCACCCTTTACCTTATTGTGGCACTAGCAGCT
GTCAGTCTCTTATCCTTAGTTACCTTCACTTTCATGTCAGCTAAGTGTCTGCGGAGGCATGAAGATGGGG
ACCGGGGTGGGGGCCACTGCTGCAGGGGCCAGGACTCACCCTCCAGGGAGTTCTATAAGCAGTCCAGCCC
CAACCTCCAGGTGAGCTCAGATGGCACACTAAAGTACATGGAGGTGACCCTGCGGCCCACGGACTCTCAG
AGCCATTGCTACAGGACCTGCTTTTCTCCGGCCTCGGATGGCAGTGACTTCACTTTCCTCAGGCCCCTCA
GCGTTCAGCAGCCCTCAGCCTTGGCGCTGGAACCCGAGGCCTTGCGTTCCCGCTCTAGTACGCTGCGGGA
GCGGAGCCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGA
TCCCAAAATGGTGATGAAACTGGCACCTGGCCCAACAACCAGTTTGATACAGAGATGCTGCAAGCCATGA
TCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCT
GAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTACCGCCAGAACGTGTACATCCCT
GGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCA
ACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (944 aa):
MRPMASPQVAGKWQVLCMLSLCCCGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKGTDLLSRRLRLGSEE
NGRYFSLSLVSGALAVSQKIDRESLCGASTSCLLPVQVVTEHPLELTRVEVEILDLNDNSPSFATPDREM
RISESAAPGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLHVKTLKDGKLFPELVLEQQLDRETQARHQL
VLTAVDGGTPARSGTSLISVIVLDVNDNAPTFQSSVLRVGLPENTPPGTLLLRLNATDPDEGTNGQLDYS
FGDHTSETVKNLFGLDPSSGAIHVLGPVDFEESNFYEIHARARDQGQPAMEGHCVIQVDVGDANDNPPEV
LLASLVNPVLESTPVGTVVGLFNVRDRDSGRNGEVSLKTSPNLPFQIKPSENHYSLLTSQPLDREATSHY
TIELLASDAGSPPLHTHLTLRLNISDVNDNAPHFTQQLYTAYIPENRPPGSLLCTVAASDPDEGDNARLT
YSIVGSQIQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPRLHANTSLHVFVLDQNDN
APAVLHPRPGREFSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSAHTGEVRT
ARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDAEEMPKSSDFLTHPPERSDLTLYLIVALAA
VSLLSLVTFTFMSAKCLRRHEDGDRGGGHCCRGQDSPSREFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQ
SHCYRTCFSPASDGSDFTFLRPLSVQQPSALALEPEALRSRSSTLRERSQQAPPNTDWRFSQAQRPGTSG
SQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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