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Report for CCDS27341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27341.1 Public Mus musculus 14 Rap2a 23 108 98 CCDS HistoryNCBI Gene:76108Re-query CCDS DB by CCDS ID:27341.1Re-query CCDS DB by GeneID:76108See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062117.13 ENSMUSP00000056433.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062117.13Link to Ensembl Protein Viewer:ENSMUSP00000056433.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062117Re-query CCDS DB by Protein ID:ENSMUSP00000056433
Original member Current member NCBI NM_029519.3 NP_083795.2 Accepted alive Link to Nucleotide Sequence:NM_029519.3Link to Protein Sequence:NP_083795.2Re-query CCDS DB by Nucleotide ID:NM_029519Re-query CCDS DB by Protein ID:NP_083795Link to BLAST:NP_083795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083795.2 183 Q80ZJ1-1 183 100% 0 0

Chromosomal Locations for CCDS 27341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 120478727 120479040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 120503601 120503838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGCGCGAGTACAAAGTGGTGGTGCTGGGCTCGGGCGGGGTAGGCAAATCCGCCCTGACCGTGCAGTTCG
TGACCGGCACCTTCATTGAGAAATACGACCCCACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGA
CTCCTCGCCTTCGGTGCTGGAGATCCTGGACACCGCGGGCACCGAGCAGTTCGCGTCCATGCGGGACCTG
TACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCTTGGTCAACCAGCAGAGCTTCCAAGACATCA
AGCCCATGCGGGACCAGATCATCCGCGTGAAGCGGTATGAGAAGGTTCCAGTCATCCTGGTCGGGAACAA
AGTGGACCTGGAGAGTGAGAGAGAAGTGTCCTCCAACGAAGGCCGCGCCTTGGCCGAGGAGTGGGGCTGC
CCCTTTATGGAGACTTCTGCTAAGAGCAAAACAATGGTGGATGAGCTCTTTGCAGAAATTGTGCGGCAGA
TGAACTATGCAGCTCAGCCTGACAAAGATGACCCATGCTGTTCTGCCTGTAACATACAATAG

Translation (183 aa):
MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL
YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGC
PFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPCCSACNIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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