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Report for CCDS26778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26778.1 Public Mus musculus 13 Mtrex 23 108 98 CCDS HistoryNCBI Gene:72198Re-query CCDS DB by CCDS ID:26778.1Re-query CCDS DB by GeneID:72198See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022281.4 ENSMUSP00000022281.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022281.4Link to Ensembl Protein Viewer:ENSMUSP00000022281.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022281Re-query CCDS DB by Protein ID:ENSMUSP00000022281
Original member Current member NCBI NM_028151.2 NP_082427.1 Accepted alive Link to Nucleotide Sequence:NM_028151.2Link to Protein Sequence:NP_082427.1Re-query CCDS DB by Nucleotide ID:NM_028151Re-query CCDS DB by Protein ID:NP_082427Link to BLAST:NP_082427.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082427.1 1040 Q9CZU3 1040 100% 0 0

Chromosomal Locations for CCDS 26778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112867943 112867995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112869011 112869115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112872899 112873061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112874596 112874652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112876436 112876541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112880979 112881142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112883100 112883288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112886755 112886865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112887435 112887563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112891279 112891347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112891888 112892060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112895473 112895623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112898765 112898890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112901473 112901574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112903399 112903509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112904986 112905065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112906985 112907116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112908895 112908997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112909816 112909914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112910910 112911034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112913100 112913190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112914356 112914530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112917589 112917701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112918568 112918630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112920360 112920426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112921630 112921767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112927230 112927357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGGCGGATGCTTTCGGGGATGAGCTTTTCAGCGTTTTCGAGGATGATTCGACCTCTGCAGCAGGAGCCA
AGAAAGACAAAGAGAAAGAGAAATGGAAGGGGCCACCAGGGTCTGCAGACAAGGCCGGGAAACGACTGGA
TACCAAATTACAATCAGAGTCAGCCAGTGGGGGGAAAAACAAAAGAGATCTAGATGTTGAAGGCACTGAT
GAACCTATTTTTGGCAAGAAGCCGAGAATAGAAGACTCAATTAATGAAGATTTAAGCCTGGCGGACCTGA
TGCCCAGAGTCAAGGTACAGTCAGTGGAAACAGTTGAAGGCTGCACACATGAGGTCGCTCTTCCTGCAGA
TGAGGATTATATACCACTTAAACCTCGAGTTGGGAAGGCAGCAAAGGAATACCCATTCATTCTTGATGCT
TTCCAAAGAGAAGCCATTCAGTGTGTTGATAATAACCAGTCTGTGCTAGTATCTGCTCATACGTCAGCAG
GGAAGACCGTGTGTGCCGAGTATGCTATTGCATTGGCTTTAAGAGAAAAACAGCGTGTAATATTTACCAG
CCCTATTAAGGCTCTAAGTAATCAGAAATACCGTGAAATGTATGAAGAATTTCAAGATGTGGGGCTGATG
ACGGGAGATGTTACTATTAATCCCACAGCATCTTGTCTCGTTATGACTACAGAGATTTTGAGAAGTATGC
TGTATAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTCATATTTGATGAAATTCATTACATGAGAGA
TTCAGAGCGTGGTGTAGTATGGGAAGAAACTATTATTTTGCTTCCAGATAATGTTCACTATGTCTTTCTT
TCGGCTACTATTCCAAATGCTCGACAGTTTGCTGAATGGATTTGTCACCTACATAAACAGCCCTGTCATG
TTATTTACACTGATTATCGACCCACTCCACTGCAACACTACATATTTCCAGCAGGGGGAGATGGCCTTCA
CCTGGTGGTTGATGAAAATGGTGACTTCAGAGAAGATAATTTTAACACTGCAATGCAAGTGCTGCGGGAT
GCAGGTGATTTGGCCAAAGGAGACCAGAAGGGACGGAAAGGAGGAACAAAAGGTCCATCAAATGTGTTCA
AGATTGTGAAGATGATTATGGAGAGAAATTTCCAGCCTGTGATCATCTTCAGTTTCAGTAAGAAGGACTG
TGAAGCATATGCTCTTCAGATGACGAAGCTAGACTTCAACACAGATGAAGAAAAGAAGATGGTTGAAGAA
GTTTTCAATAATGCAATTGACTGCTTGTCTGATGAAGATAAAAAGCTCCCTCAGGTTGAACATGTGCTTC
CACTTTTGAAGCGGGGGATTGGTATTCACCATGGTGGCTTACTTCCTATTTTGAAAGAAACTATAGAAAT
TCTCTTTTCTGAAGGATTGATAAAGGCTTTATTTGCCACAGAGACTTTTGCTATGGGAATTAACATGCCA
GCTAGAACTGTTTTATTTACAAATGCCCGTAAATATGACGGAAAGGACTTCAGATGGATTTCCTCTGGCG
AGTACATCCAGATGTCTGGTCGCGCAGGAAGGAGAGGCATGGACGACAGAGGGATTGTGATTCTTATGGT
AGACGAGAAGATGAGCCCAACTATTGGAAAGCAGCTGCTTAAGGGGTCAGCTGATCCTCTGAACAGTGCT
TTCCATCTGACCTATAACATGGTTTTGAACTTACTAAGAGTAGAAGAAATTAACCCCGAGTACATGCTTG
AAAAATCCTTCTACCAGTTTCAGCATTATAGAGCAATTCCAGGGGTCGTAGAAAAGGTAAAGAACTCAGA
AGAGCAGTATAATAAAATAGTCATTCCCAATGAAGAAAATGTGGTCATCTATTACAAGATTAGACAGCAA
CTTGCCAAGCTGGGAAAAGAGATTGAAGAATATATTCATAAACCAAAGTACTGCTTACCCTTTCTACAGC
CAGGCCGTTTGGTAAAGGTGAAAAATGAAGGCGATGATTTCGGCTGGGGAGTAGTAGTGAACTTCTCAAA
AAAGTCAAATGTCAAGCCCAATTCTGGCGAACTGGATCCCTTGTATGTGGTGGAAGTCCTCCTGCGCTGT
AGCAAGGAAAGCCTGAAGAACTCAGCCACCGAGGCAGCAAAGCCAGCGAAGCCAGACGAGAAAGGGGAGA
TGCAGGTTGTTCCAGTTTTGGTGCATCTCCTGTCTGCCATCAGCACTGTCAGGCTCTATATTCCAAAAGA
CCTTCGACCTGTGGACAACAGACAGAGTGTCTTAAAATCCATACAGGAAGTTCAAAGGCGCTTTCCCGAC
GGCGTTCCTCTGTTAGATCCGATCGATGATATGGGCATCCAAGATCAAGGACTGAAGAAAGTCATCCAGA
AAGTAGAGGCCTTTGAGCATCGCATGTACTCACACCCACTCCACAATGATCCTAACTTGGAAACTGTTTA
TACACTGTGTGAAAGAAAGGCCCAGATTGCACTAGATATCAAGTCTGCAAAGAGAGAACTGAAGAAGGCA
AGAACTGTTCTGCAAATGGACGAGCTCAAATGCCGCAAGCGCGTGCTGAGACGGCTGGGCTTTGCGACAT
CGTCGGATGTCATAGAGATGAAAGGACGGGTGGCTTGTGAAATAAGCAGTGCGGACGAGCTCCTTCTAAC
GGAGATGATGTTCAATGGGCTTTTCAATGACCTTTCTTCAGAGCAGGCAACCGCACTGTTAAGCTGTTTT
GTGTTTCAAGAGAATTCTAGTGAGATGCCCAAACTAACAGAGCAGTTAGCTGGACCACTCCGACAAATGC
AGGAATGTGCTAAAAGGATTGCAAAAGTTTCAGCAGAGGCAAAGCTGGAGATTGATGAAGAAACTTACCT
AAGCTCATTCAAGCCTCACCTGATGGATGTGGTGTATACCTGGGCAACTGGGGCCACATTTGCCCATATC
TGCAAAATGACAGATGTTTTCGAAGGCAGTATAATTCGTTGTATGAGGCGTCTGGAAGAACTGCTTCGAC
AGATGTGTCAAGCAGCAAAAGCCATTGGAAACACAGAGCTGGAGAACAAATTTGCTGAAGGAATTACCAA
AATCAAGAGGGATATTGTATTTGCTGCCAGCCTCTACTTATAG

Translation (1040 aa):
MADAFGDELFSVFEDDSTSAAGAKKDKEKEKWKGPPGSADKAGKRLDTKLQSESASGGKNKRDLDVEGTD
EPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDA
FQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM
TGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFL
SATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRD
AGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP
ARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSA
FHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQ
LAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRC
SKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPD
GVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCF
VFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHI
CKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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