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Report for CCDS19864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19864.1 Public Mus musculus 5 Cyp3a44 23 108 98 CCDS HistoryNCBI Gene:337924Re-query CCDS DB by CCDS ID:19864.1Re-query CCDS DB by GeneID:337924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067479.5 ENSMUSP00000069932.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067479.5Link to Ensembl Protein Viewer:ENSMUSP00000069932.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067479Re-query CCDS DB by Protein ID:ENSMUSP00000069932
Original member Current member NCBI NM_177380.3 NP_796354.1 Accepted alive Link to Nucleotide Sequence:NM_177380.3Link to Protein Sequence:NP_796354.1Re-query CCDS DB by Nucleotide ID:NM_177380Re-query CCDS DB by Protein ID:NP_796354Link to BLAST:NP_796354.1

Chromosomal Locations for CCDS 19864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145774345 145774440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145777921 145778083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145779523 145779749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145788361 145788521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145790650 145790719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145791615 145791742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145794319 145794467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145794735 145794823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145794903 145795016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145799321 145799420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145801276 145801328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145803664 145803757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145805719 145805789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAACCTATTTTCAGCTCTCTCACTGGATACATTGGTCCTGCTGGCAATCATCCTGGTGCTCCTCTACC
GATATGGGACCCGTACACATGGACTTTTTAAGAAACAGGGGATTCCTGGGCCCAAACCTCTGCCATTTTT
AGGCACTGTGCTGAATTATTACACGGGTATATGGAAATTTGACATGGAGTGCTATGAAAAGTATGGAAAA
ACATGGGGGTTGTTTGATGGTCAAACACCTCTCCTTGTCATCACGGACCCAGAGACGATTAAGAATGTGC
TAGTGAAGGATTGTTTATCTGTCTTCACAAACCGGCGGGAATTTGGCCCAGTGGGGATAATGAGTAAAGC
TATCTCAATATCTAAGGATGAGGAATGGAAGAGATATAGAGCTTTGCTGTCCCCCACATTCACCAGTGGA
AGACTCAAGGAGATGTTCCCTGTCATTGAACAGTATGGAGACATTTTGGTAAAGTACTTGAGGCAAGAGG
CAGAGAAAGGCATGCCTGTTGCTATGAAAGATGTGTTAGGTGCTTACAGCATGGATGTGATCACCAGCAC
ATCATTTGGAGTGAACGTGGATTCCCTCAACAACCCAGAGGATCCTTTTGTGGAGGAAGCCAAAAAGTTT
TTAAGAGTTGACTTTTTTGATCCTTTGCTCTTCTCAGTAGTACTTTTTCCATTACTGACACCAGTATATG
AGATGTTAAATATCTGCATGTTCCCAAATGATTCAATAGAATTTTTCAAAAAATTTGTGGACAGAATGCA
GGAAAGCCGCCTGGATTCTAATCAGAAGCACCGAGTGGATTTTCTTCAGCTGATGATGAATTCTCATAAT
AATTCCAAAGACAAAGACTCTCATAAAGCCTTTTCTAACATGGAGATCACAGTCCAGTCAATTATCTTTA
TTTCTGCTGGGTATGAAACCACCAGTAGCACACTTTCCTTCACCTTGTATTGTTTGGCCACTCACCCTGA
TATCCAGAAGAAACTGCAGGCAGAGATCGATAAGGCTCTGCCCAATAAGGCAACTCCCACCTGTGATACT
GTGATGGAGATGGAATACCTGGATATGGTGCTTAATGAAACCCTCAGATTATATCCCATTGTTACTAGAC
TTGAGAGAGTCTGTAAGAAAGATGTTGAACTCAATGGTGTGTATATCCCCAAAGGGTCAATGGTGATGAT
TCCATCTTATGCTCTTCACCATGACCCACAGCACTGGCCAGACCCTGAAGAATTCCAACCTGAAAGGTTC
AGCAAGGAGAACAAGGGCAGCATTGATCCTTACGTATATCTGCCCTTTGGAATTGGACCCAGGAACTGCA
TTGGCATGAGGTTTGCTCTCATGAATATGAAACTTGCTGTCACTAAAGTTCTGCAGAACTTTTCCTTCCA
GCCTTGTCAGGAAACACAGATACCTCTGAAATTAAGCAGACAAGGAATTCTTCAACCAGAAAAACCCATT
GTTCTAAAAGTTGTGCCACGGGATGCAGTTATAACTGGAGCATGA

Translation (504 aa):
MNLFSALSLDTLVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYTGIWKFDMECYEKYGK
TWGLFDGQTPLLVITDPETIKNVLVKDCLSVFTNRREFGPVGIMSKAISISKDEEWKRYRALLSPTFTSG
RLKEMFPVIEQYGDILVKYLRQEAEKGMPVAMKDVLGAYSMDVITSTSFGVNVDSLNNPEDPFVEEAKKF
LRVDFFDPLLFSVVLFPLLTPVYEMLNICMFPNDSIEFFKKFVDRMQESRLDSNQKHRVDFLQLMMNSHN
NSKDKDSHKAFSNMEITVQSIIFISAGYETTSSTLSFTLYCLATHPDIQKKLQAEIDKALPNKATPTCDT
VMEMEYLDMVLNETLRLYPIVTRLERVCKKDVELNGVYIPKGSMVMIPSYALHHDPQHWPDPEEFQPERF
SKENKGSIDPYVYLPFGIGPRNCIGMRFALMNMKLAVTKVLQNFSFQPCQETQIPLKLSRQGILQPEKPI
VLKVVPRDAVITGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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