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Report for CCDS28383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28383.1 Public Mus musculus 17 T 23 108 98 CCDS HistoryNCBI Gene:20997Re-query CCDS DB by CCDS ID:28383.1Re-query CCDS DB by GeneID:20997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074667.8 ENSMUSP00000074236.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074667.8Link to Ensembl Protein Viewer:ENSMUSP00000074236.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074667Re-query CCDS DB by Protein ID:ENSMUSP00000074236
Original member Current member NCBI NM_009309.2 NP_033335.1 Accepted alive Link to Nucleotide Sequence:NM_009309.2Link to Protein Sequence:NP_033335.1Re-query CCDS DB by Nucleotide ID:NM_009309Re-query CCDS DB by Protein ID:NP_033335Link to BLAST:NP_033335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033335.1 436 P20293 436 100% 0 0

Chromosomal Locations for CCDS 28383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8434531 8434736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8435191 8435455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8436111 8436245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8436978 8437039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8437150 8437211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8438616 8438789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8439910 8440039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8441593 8441869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGCTCGCCGGGCACAGAGAGCGCAGGGAAGAGCCTGCAGTACCGAGTGGACCACCTGCTCAGCGCCG
TGGAGAGCGAGCTGCAGGCGGGCAGCGAGAAGGGAGACCCCACCGAACGCGAACTGCGAGTGGGCCTGGA
GGAGAGCGAGCTGTGGCTGCGCTTCAAGGAGCTAACTAACGAGATGATTGTGACCAAGAACGGCAGGAGG
ATGTTCCCGGTGCTGAAGGTAAATGTGTCAGGCCTGGACCCCAATGCCATGTACTCTTTCTTGCTGGACT
TCGTGACGGCTGACAACCACCGCTGGAAATATGTGAACGGGGAGTGGGTACCTGGGGGCAAACCAGAGCC
TCAGGCGCCCAGCTGCGTCTACATCCACCCAGACTCGCCCAATTTTGGGGCCCACTGGATGAAGGCGCCT
GTGTCTTTCAGCAAAGTCAAACTCACCAACAAGCTCAATGGAGGGGGACAGATCATGTTAAACTCCTTGC
ATAAGTATGAACCTCGGATTCACATCGTGAGAGTTGGGGGCCCGCAACGCATGATCACCAGCCACTGCTT
TCCCGAGACCCAGTTCATAGCTGTGACTGCCTACCAGAATGAGGAGATTACAGCCCTTAAAATTAAATAC
AACCCATTTGCTAAAGCCTTCCTTGATGCCAAAGAAAGAAACGACCACAAAGATGTAATGGAGGAACCGG
GGGACTGCCAGCAGCCGGGGTATTCCCAATGGGGGTGGCTTGTTCCTGGTGCTGGCACCCTCTGCCCGCC
TGCCAGCTCCCACCCTCAGTTTGGAGGCTCGCTCTCTCTCCCCTCCACACACGGCTGTGAGAGGTACCCA
GCTCTAAGGAACCACCGGTCATCGCCCTACCCCAGCCCCTATGCTCATCGGAACAGCTCTCCAACCTATG
CGGACAATTCATCTGCTTGTCTGTCCATGCTGCAGTCCCATGATAACTGGTCTAGCCTCGGAGTGCCTGG
CCACACCAGCATGCTGCCTGTGAGTCATAACGCCAGCCCACCTACTGGCTCTAGCCAGTATCCCAGTCTC
TGGTCTGTGAGCAATGGTACCATCACCCCAGGCTCCCAGACAGCTGGGGTGTCCAACGGGCTGGGAGCTC
AGTTCTTTCGAGGCTCCCCTGCACATTACACACCACTGACGCACACGGTCTCAGCTGCCACGTCCTCGTC
TTCTGGTTCTCCGATGTATGAAGGGGCTGCTACAGTCACAGACATTTCTGACAGCCAGTATGACACGGCC
CAAAGCCTCCTCATAGCCTCGTGGACACCTGTGTCACCCCCATCTATGTGA

Translation (436 aa):
MSSPGTESAGKSLQYRVDHLLSAVESELQAGSEKGDPTERELRVGLEESELWLRFKELTNEMIVTKNGRR
MFPVLKVNVSGLDPNAMYSFLLDFVTADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAP
VSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQNEEITALKIKY
NPFAKAFLDAKERNDHKDVMEEPGDCQQPGYSQWGWLVPGAGTLCPPASSHPQFGGSLSLPSTHGCERYP
ALRNHRSSPYPSPYAHRNSSPTYADNSSACLSMLQSHDNWSSLGVPGHTSMLPVSHNASPPTGSSQYPSL
WSVSNGTITPGSQTAGVSNGLGAQFFRGSPAHYTPLTHTVSAATSSSSGSPMYEGAATVTDISDSQYDTA
QSLLIASWTPVSPPSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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