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Report for CCDS16180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16180.1 Public Mus musculus 2 Zc3h15 23 108 98 CCDS HistoryNCBI Gene:69082Re-query CCDS DB by CCDS ID:16180.1Re-query CCDS DB by GeneID:69082See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081591.6 ENSMUSP00000080301.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081591.6Link to Ensembl Protein Viewer:ENSMUSP00000080301.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081591Re-query CCDS DB by Protein ID:ENSMUSP00000080301
Original member Current member NCBI NM_026934.3 NP_081210.2 Accepted alive Link to Nucleotide Sequence:NM_026934.3Link to Protein Sequence:NP_081210.2Re-query CCDS DB by Nucleotide ID:NM_026934Re-query CCDS DB by Protein ID:NP_081210Link to BLAST:NP_081210.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081210.2 426 Q3TIV5-1 426 100% 0 0

Chromosomal Locations for CCDS 16180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 83644653 83644727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83653358 83653459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83657016 83657127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83658009 83658161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83658530 83658621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83660058 83660240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83661147 83661293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83661433 83661534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83662149 83662272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83663820 83664010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAGAAGGCGGAGCAGAAGAAGAAGGAGAAGATCA
TCGAGGACAAAACTTTTGGACTGAAGAATAAGAAAGGAGCAAAGCAACAGAAATTTATTAAGGCTGTCAC
TCATCAAGTGAAATTTGGTCAACAGAATCCACGTCAGGTAGCGCAAAGTGAAGCTGAAAAGAAATTGAAG
AAAGATGACAAGAAGAAAGAACTACAAGAGCTAAATGAGTTGTTCAAACCTGTAGTTGCTGCACAAAAAA
TAAGCAAAGGTGCAGATCCCAAATCTGTGGTGTGCGCATTCTTCAAACAGGGACAGTGTACTAAAGGAGA
TAAATGTAAGTTCTCTCATGACCTCACTTTGGAGAGAAAATGTGAAAAACGAAGTGTTTACATTGATGCA
AGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAAGTAGTAAACA
AGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAGACATTTTCTTGAAGCTAT
TGAAAATAACAAGTATGGCTGGTTTTGGGTGTGTCCTGGAGGTGGGGACAACTGCATGTATCGCCATGCA
CTTCCTCCTGGATTTGTGCTAAAGAAAGACAAAAAGAAAGAAGAGAAGGAAGATGAAATCTCATTAGAAG
ATCTAATTGAAAGAGAGCGTTCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAGTCTTTTCTCGC
GTGGAAGAAGAGGAAAAGACAAGAAAAGATTGATAAACTTGAACAAGATATGGAGAGGCGGAAAGCTGAC
TTCAAAGCAGGGAAAGCACTGGTGATCAGTGGTCGTGAGGTATTTGAATTTCGTCCCGAGCTGGTCAATG
ATGATGACGAGGAAGCAGACGATACCCGTTACATTCAGGGAACAGGTGGTGATGAGGTTGATGATTCTAT
GGGTGTAAATGACATAGATATAAGCCTGTACGTCCCAAGAGATGTAGAAGAGACAGGTATCACTGTGGCC
AGTGTTGAAAGATTCAGCACCTATGCGCCAGACAAAGACGAGAACAAATTAAGTGAAGCTTCTGGGGGTC
TGGCTGAAAATGGTGAAAGAAGTGATTTGGACGAGGACAGCGGAGGGGGAGGACAGGAAAATGGATCCAT
CGATGCTGTTCCTGTTGATGAAAACCTGTTCACTGGCGAAGATCTGGATGAACTAGAAGAGGAATTGAAC
ACTCTTGACTTAGAAGAATGA

Translation (426 aa):
MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLK
KDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDA
RDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHA
LPPGFVLKKDKKKEEKEDEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKAD
FKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSMGVNDIDISLYVPRDVEETGITVA
SVERFSTYAPDKDENKLSEASGGLAENGERSDLDEDSGGGGQENGSIDAVPVDENLFTGEDLDELEEELN
TLDLEE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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