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Report for CCDS22948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22948.1 Public Mus musculus 9 St14 23 108 98 CCDS HistoryNCBI Gene:19143Re-query CCDS DB by CCDS ID:22948.1Re-query CCDS DB by GeneID:19143See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034478.2 ENSMUSP00000034478.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034478.2Link to Ensembl Protein Viewer:ENSMUSP00000034478.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034478Re-query CCDS DB by Protein ID:ENSMUSP00000034478
Original member Current member NCBI NM_011176.4 NP_035306.2 Accepted alive Link to Nucleotide Sequence:NM_011176.4Link to Protein Sequence:NP_035306.2Re-query CCDS DB by Nucleotide ID:NM_011176Re-query CCDS DB by Protein ID:NP_035306Link to BLAST:NP_035306.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035306.2 855 P56677 855 100% 0 0

Chromosomal Locations for CCDS 22948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 31089866 31090027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31090402 31090538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31091337 31091611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31095535 31095721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31096475 31096597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31096854 31096967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31097073 31097183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31097557 31097661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31100140 31100270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31100386 31100495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31102876 31102973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31103686 31103825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31106014 31106254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31106489 31106524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31106717 31106874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31107904 31107974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31108155 31108282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31108571 31108730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31131546 31131626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGGGTAGCAATCGGGGCCGCAAGGCCGGAGGGGGCTCTCAGGACTTCGGCGCGGGACTCAAGTACAACT
CCCGGCTAGAGAACATGAATGGCTTTGAGGAGGGTGTGGAGTTCCTGCCTGCGAACAATGCCAAGAAAGT
GGAGAAGCGAGGCCCCAGGCGCTGGGTGGTGCTGGTGGCAGTGCTGTTCAGCTTCCTCTTGCTCTCCCTC
ATGGCTGGCTTGCTGGTGTGGCACTTCCATTATCGGAATGTGCGGGTTCAAAAAGTCTTCAATGGCCATC
TGAGGATCACAAATGAGATCTTTCTGGATGCGTATGAGAACTCCACCTCCACAGAGTTTATCAGCCTGGC
CAGCCAGGTGAAGGAGGCGCTGAAGCTGCTGTACAATGAAGTCCCTGTCCTGGGTCCCTACCACAAGAAG
TCGGCTGTAACTGCCTTCAGTGAGGGCAGTGTCATCGCCTACTACTGGTCAGAGTTCAGCATCCCCCCAC
ACCTGGCAGAAGAGGTTGATCGCGCCATGGCTGTGGAGCGAGTTGTAACATTGCCACCCCGAGCACGGGC
ACTGAAATCCTTCGTGCTAACATCTGTGGTGGCCTTCCCCATTGACCCCAGAATGCTGCAGAGGACTCAG
GACAACAGCTGCAGTTTTGCCCTGCATGCCCATGGTGCAGCAGTGACACGCTTCACTACCCCTGGCTTCC
CCAACAGTCCCTACCCGGCGCATGCCCGCTGCCAGTGGGTCCTGCGGGGGGACGCCGACTCTGTGCTGAG
CCTCACCTTCCGAAGCTTTGATGTCGCTCCCTGTGATGAGCATGGCAGTGACCTGGTCACCGTGTATGAT
AGCCTGAGCCCCATGGAACCCCACGCTGTGGTGCGGCTGTGTGGCACCTTCTCACCCTCCTACAACCTGA
CTTTCCTCTCCTCCCAGAACGTCTTCCTTGTCACGCTGATAACCAATACTGACCGGCGACATCCTGGCTT
TGAGGCCACTTTCTTCCAGCTGCCCAAGATGAGCAGCTGTGGCGGCTTTTTGAGTGACACCCAAGGGACA
TTTAGCAGCCCCTACTATCCAGGCCACTACCCGCCCAACATCAACTGCACATGGAATATCAAGGTGCCCA
ACAACCGGAACGTGAAGGTGCGCTTCAAACTCTTCTATCTGGTGGACCCCAACGTACCAGTGGGCTCCTG
CACCAAGGACTATGTGGAGATCAACGGGGAGAAGTACTGCGGTGAGAGGTCCCAGTTTGTGGTGAGCAGC
AACAGCAGCAAGATTACAGTCCACTTCCATTCTGATCACTCGTACACGGACACCGGGTTCCTAGCTGAGT
ACCTCTCCTACGACTCCAACGACCCGTGCCCAGGGATGTTCATGTGCAAGACTGGACGGTGCATCCGAAA
GGAACTGCGCTGCGACGGCTGGGCAGACTGCCCGGATTATAGTGATGAGCGTTACTGCCGATGCAATGCC
ACCCACCAGTTCACGTGCAAAAACCAGTTCTGCAAGCCCCTCTTCTGGGTCTGTGACAGTGTCAACGACT
GTGGGGACGGAAGTGACGAGGAGGGCTGCAGCTGTCCTGCTGGGAGTTTCAAGTGTTCCAATGGGAAGTG
TCTCCCTCAGAGCCAGAAGTGTAATGGGAAGGACAACTGTGGAGATGGGTCTGACGAGGCTTCATGTGAC
AGCGTGAATGTCGTCTCTTGCACCAAATATACCTACCGCTGCCAAAATGGCCTCTGTCTGAGCAAGGGCA
ACCCTGAGTGTGATGGGAAGACGGACTGTAGCGATGGCTCCGATGAGAAAAACTGTGACTGTGGGCTGCG
ATCCTTTACCAAACAGGCTCGCGTGGTTGGTGGCACGAATGCGGACGAGGGCGAGTGGCCCTGGCAGGTG
AGCCTCCACGCCCTGGGCCAGGGCCACTTGTGTGGGGCCTCGCTCATCTCTCCTGACTGGCTGGTCTCTG
CAGCTCATTGCTTTCAGGATGACAAAAATTTCAAGTACTCAGACTACACGATGTGGACGGCCTTCCTGGG
TCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTGCAGGAGCTGAAGCTCAAACGTATCATCACCCAC
CCTTCCTTCAATGATTTCACCTTCGACTATGACATCGCCTTGCTGGAGCTGGAGAAGTCGGTGGAGTACA
GCACCGTCGTGCGCCCCATCTGCCTGCCTGATGCTACCCATGTCTTCCCTGCTGGCAAGGCCATCTGGGT
CACAGGCTGGGGGCACACAAAAGAGGGAGGTACCGGAGCGCTGATCCTGCAGAAGGGTGAGATCCGTGTC
ATCAACCAGACCACCTGTGAGGACCTCATGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCC
TCAGTGGGGGTGTGGACTCCTGCCAGGGTGACTCTGGTGGCCCCTTGTCAAGCGCGGAGAAAGATGGGCG
AATGTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACA
AGGCTCCCTGTAGTTCGGGACTGGATCAAAGAGCACACTGGGGTATAG

Translation (855 aa):
MGSNRGRKAGGGSQDFGAGLKYNSRLENMNGFEEGVEFLPANNAKKVEKRGPRRWVVLVAVLFSFLLLSL
MAGLLVWHFHYRNVRVQKVFNGHLRITNEIFLDAYENSTSTEFISLASQVKEALKLLYNEVPVLGPYHKK
SAVTAFSEGSVIAYYWSEFSIPPHLAEEVDRAMAVERVVTLPPRARALKSFVLTSVVAFPIDPRMLQRTQ
DNSCSFALHAHGAAVTRFTTPGFPNSPYPAHARCQWVLRGDADSVLSLTFRSFDVAPCDEHGSDLVTVYD
SLSPMEPHAVVRLCGTFSPSYNLTFLSSQNVFLVTLITNTDRRHPGFEATFFQLPKMSSCGGFLSDTQGT
FSSPYYPGHYPPNINCTWNIKVPNNRNVKVRFKLFYLVDPNVPVGSCTKDYVEINGEKYCGERSQFVVSS
NSSKITVHFHSDHSYTDTGFLAEYLSYDSNDPCPGMFMCKTGRCIRKELRCDGWADCPDYSDERYCRCNA
THQFTCKNQFCKPLFWVCDSVNDCGDGSDEEGCSCPAGSFKCSNGKCLPQSQKCNGKDNCGDGSDEASCD
SVNVVSCTKYTYRCQNGLCLSKGNPECDGKTDCSDGSDEKNCDCGLRSFTKQARVVGGTNADEGEWPWQV
SLHALGQGHLCGASLISPDWLVSAAHCFQDDKNFKYSDYTMWTAFLGLLDQSKRSASGVQELKLKRIITH
PSFNDFTFDYDIALLELEKSVEYSTVVRPICLPDATHVFPAGKAIWVTGWGHTKEGGTGALILQKGEIRV
INQTTCEDLMPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSAEKDGRMFQAGVVSWGEGCAQRNKPGVYT
RLPVVRDWIKEHTGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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