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Report for CCDS27890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27890.1 Public Mus musculus 15 Hoxc13 23 108 98 CCDS HistoryNCBI Gene:15422Re-query CCDS DB by CCDS ID:27890.1Re-query CCDS DB by GeneID:15422See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001700.6 ENSMUSP00000001700.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001700.6Link to Ensembl Protein Viewer:ENSMUSP00000001700.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001700Re-query CCDS DB by Protein ID:ENSMUSP00000001700
Original member Current member NCBI NM_010464.2 NP_034594.1 Accepted alive Link to Nucleotide Sequence:NM_010464.2Link to Protein Sequence:NP_034594.1Re-query CCDS DB by Nucleotide ID:NM_010464Re-query CCDS DB by Protein ID:NP_034594Link to BLAST:NP_034594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034594.1 328 P50207 328 100% 0 0

Chromosomal Locations for CCDS 27890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102921188 102921917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102927169 102927425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGACGACTTCGCTGCTCCTGCACCCGCGCTGGCCGGAGAGCCTTATGTACGTCTATGAGGACAGCGCGG
CGGAGAGCGGCAGCGGCGGCGGCGGGGGAGGCGGCGGCGCGGGCGGCGCGGGGGGTGGCTGCAGCGGAGC
GAGCCCCGGCAAAGCCCCGAGCATGGACGGGCTGGGCGGTAGCTGCCCGGCCAGCCACTGCCGCGACCTG
CTCCCGCACCCTGTATTGGCCCGCCCGCCGGCTCCTCTGGGTGCCCCTCAGGGCGCCGTCTACACGGACA
TCCCAGCCCCGGAGGCGGCGCGCCAATGCGCCCCACCGCCGGCGCCCCCCACCTCGTCCAGCGCCACCCT
GGGCTATGGTTACCCATTTGGGGGCAGCTACTACGGCTGCCGCCTGTCGCACAACGTGAACCTGCAGCAG
AAGCCTTGCGCCTACCATCCGGGGGACAAGTACCCAGAGCCGTCGGGCGCGCTGCCTGGTGACGACCTGT
CCTCCAGGGCTAAGGAGTTCGCCTTCTACCCCAGCTTCGCCAGCTCCTACCAGGCAATGCCCGGCTACCT
GGACGTGTCGGTGGTGCCTGGGATCAGCGGGCACCCGGAGCCGCGTCACGACGCGCTCATCCCTGTTGAA
GGCTACCAGCACTGGGCTCTTTCCAATGGCTGGGACAGTCAGGTGTACTGCTCCAAGGAGCAGTCGCAGT
CCGCCCACCTCTGGAAGTCTCCCTTCCCAGACGTGGTTCCTCTACAGCCCGAAGTGAGCAGCTACCGGCG
CGGGCGCAAGAAGCGCGTGCCCTATACCAAGGTGCAGCTGAAGGAGCTAGAGAAGGAGTACGCAGCCAGC
AAATTCATCACCAAAGAGAAGCGCCGGCGCATCTCAGCCACCACGAACCTCTCGGAGCGTCAGGTCACCA
TCTGGTTCCAGAATCGACGCGTGAAAGAGAAAAAGGTGGTCAGCAAATCTAAAGCGCCTCATCTCCACTC
CACCTGA

Translation (328 aa):
MTTSLLLHPRWPESLMYVYEDSAAESGSGGGGGGGGAGGAGGGCSGASPGKAPSMDGLGGSCPASHCRDL
LPHPVLARPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQ
KPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVE
GYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAAS
KFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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