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Report for CCDS22471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22471.1 Public Mus musculus 8 Zswim4 23 108 98 CCDS HistoryNCBI Gene:212168Re-query CCDS DB by CCDS ID:22471.1Re-query CCDS DB by GeneID:212168See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039480.6 ENSMUSP00000040078.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039480.6Link to Ensembl Protein Viewer:ENSMUSP00000040078.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039480Re-query CCDS DB by Protein ID:ENSMUSP00000040078
Original member Current member NCBI NM_172503.3 NP_766091.2 Accepted alive Link to Nucleotide Sequence:NM_172503.3Link to Protein Sequence:NP_766091.2Re-query CCDS DB by Nucleotide ID:NM_172503Re-query CCDS DB by Protein ID:NP_766091Link to BLAST:NP_766091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766091.2 1101 Q8C7B8 1101 100% 0 0

Chromosomal Locations for CCDS 22471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84211946 84212805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84214023 84214104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84217245 84217408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84219826 84219980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84223220 84223355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84223671 84223925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84224143 84224280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84225816 84226166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84226672 84226839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84228792 84228942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84229023 84229171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84230741 84231097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84234903 84235104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84236867 84237004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3306 nt):
ATGGAGCCCCCGGCGGCCAAGCGCAGCCGGGGCTGCCCCGCGGGGGACGAGCCCGGGACCGGGGCCCGTC
GCAGTCGCCCCGAGCCGTTGTTGGACCTTAGCGCCAAGCGGGTGGCCGAGAGCTGGGCCTTCGAGCAGGT
GGAGGAAAGGTTCTCCCGGGTGCCGGAACCGGTTCAGAAGCGCATTGTGTTCTGGTCTTTTCCACGAAGT
GAGCGGGAGATCTGTATGTACTCATCACTGGGCTACCAGCCCCCAGAAGGTGAGCAGGACACCCGGGTAC
CATTCACCCGTGGGCTGCACCTGCTACAGAGTGGGGCTGTGGATCGAGTGCTACAAGTAGGGTTCCACCT
GAGTGGGAATATTCGAGAAGTTGGGGGCCCAGGAGAGCCAGAGCATCTCTACCACGTCTCCATCAGCTTT
GACCGCTGCAAGATCACATCTGTGAGCTGTGGCTGCGACAATCGGGACCTCTTCTACTGTGCCCACGTGG
TGGCGCTGTCATTGTACCGCATCCGTCATGCTCGCCAGGTGGAGCTGCGGCTGCCCATCTCTGAGACTCT
GTCACAAATGAACCGGGATCAGCTTCAGAAGTTTGTGCAGTATCTCATCAGTGCACACCACACTGAGGTG
CTGCCTACCGCCCAACGTCTTGCTGACGAGATCCTCCTGCTGGGCTCTGAGATCAACCTGGTTCATGGTG
CCCCAGATCCCACAGCGGGTGCAGGCACAGAAGATGCCAACTGTTGGCATCTGGATGAGGAGCAGATCCA
AGAGCAGGTGAAACAGCTGCTGTCCAATGGTGGCCACTATGGGGCCAGCCAGCAGCTGCGCTCCATGTTC
AGCAAGGTGCGGGAGATGCTTCGAGCACGGGACTCCAATGGGGCACGCATGCTAATCCTCATGACTGAGC
AGTTCCTGCAGGACCCTCGCCTGGCCCTGTGGCGGCAGCAAGGTGCTGGCATGACAGACAAGTGCCGGCA
GCTGTGGGATGAGCTGGGGGCTTTGTGGGTCTGTGTCATTTTGAGCCCACACTGCAAACCAGATGAGCGG
TCGGGATGGCTGCAGCTACTTGGCACATGGGACAAGCTAGATGTGTGCCCACTGGAAGAAGGCAACTATT
CCTTGGACATCCCCAGCCTACAGCCTGCTCTAACCTCCAGGACAGGCTCAGAGGATGAAGAAGAGGTGAC
AGCCGCCAGCCCCCGCAGGACAGTTTTCAGCCGAGCACTGCAGGCTGGAGAGTTGCACTGGAATGACAGC
CACCTACAGAGGATCCTGGCCAGTGATTCCTGTGGCCCCACCCTCACTGGCAGTATGGGAAGTGACAAGC
CAACCTTTGACCCTCAGGGCCACCCCATCTGGCTGGGCGAACCTTTCCCTACTGCCTGTGCACGGGTGGA
TACTTTGCGGGCCCATGGTTATCCCCACAAGGCTCTGCGGCTGGCGTGTGCCATAATCAACACCCTGCGC
CTGCAGAGGCGACACCAGCTTGAGAGCTACAAGCAGCAGAAAAAAGAACTGCTCCAGAAAGGTGCTACTG
GTGTCACAAGCACTGAAGGTTGGGTGGGCCATCCCCTGGATCCCATTGGCTGCCTCTGCAGGGCACTGCT
GGAGGCCTGTCGCCTGGAGGAGGAGCCTCACTCTCTTTTCCCAGACTCAGCCCCAGAGAAGCGAAAGCTG
GCCTACCAGCACGTGCTGGTGCCCGGGAGCCCTGGAGAGTCCTACTTGGCACTGGCACTGGAAGTGGCAC
TCCTGGGGCTAGGGCAGCAGCGGGCCCTGCCGGAGGGACTGTATGCCCAGGACAAAGTGGTGCGCAATGA
AGAACAGCTACTGGCCCTGCTGGAGGAGGTGGAGCTGGACGAGCGGCTGGTGCAAGTGCTGCGAAAGCAG
GCTGGGCTGCTGCTGGAAGGAGGCCCTTTCAGCGGCTTTGGAGAAGTGATTTTCCGGGAGAGCGTACCCA
TGCACACCTGTGCCCGATACTTGTTCACTGCGCTGCTGCCCCACGACCCAGATCTGGCCTTCCGCCTGGC
GCTCCGAGCCATGAGGCTGCCTGTGCTGGAGACAACATTCCCCGCTGGAGAATCTCACCCCAACCCACTG
GACTCCATCATGAGTAACCGCTTCCCCCGGTGGTTCATCCTTGGCCACCTGGAGACCCGCCAGTGTGAGC
TGGCCTCCACCATGCTGACGGCTGCCAAAGGAGATACCAAGTGGCTGCATGCGGTTCTGGGCTCCGTCCA
GCAAAATATCCACTCCCCAGCCCTGCTCTTCAAGTTGGCACAGGATGCCTGCAAGACAGCCACTCCAGCC
AGCGCACCGCCAGACACCGTGCTGCTGGGCATCGCGCTGGAGCTCGGCCTGCAGGTGATGCGGATGACAC
TGAACACCATGACTTGGCGGCGCAGGGAGATGGTTCGCTGGCTGGTTAGCTGCGCCACGGAGATTGGCCC
ACCAGCGCTGATGAGCATCATGAAGAACTGGTACTCCTTGTTCACCCCAGTGGAGGCGGTCACCATAGTG
GCAGTGACAGGCACCACGCATGCCACTTTGCTGCGACTGCAGCTAGATACAGCTGGGCGAGAGGAGCTCT
GGGCTTGTGCCCGCACCTTGGCACTGCAGTGCGCCATGAAGGATCCCCAGAACTGCGCCTTGCCAGCCCT
GACCCTGTGTGAGAAGAACCACGCGGCCTTTGAGGCTGCCTACCAGATTGTGCTGGACGCTGCAGCCGGT
GGCCTCGGCCACGCCCACCTCTTCACGGTTGCACGGTATATGGAGCATCGAGGCCTGCCTCTGCGGGCCT
ACAAGCTGGCCACGCTAGCCTTGGCACAACTCAGCATTGCCTTCAACCAAGACAGCCACCCTGCAGTCAA
CGATGTGCTGTGGGCCTGCTCCCTCAGCCACTCGCTGGGGCGGCACGAATTGTCGGCCATTGTCCCTCTC
ATCATCCGAAGCATCCACTGTGCACCCATGCTCTCAGACATCCTGCGACGCTGGACACTCTCAGCACCCG
GGCTGGGCCCACTGGGGGCCCGCAGGGCTACCAAACCACTAGGGACTGACAGGGCACCACTTTGTCAGCT
TCTGGATGCCGCAGTAGCCGCGTACATAACCACCAGCCACTCTCGCCTCACCCACATTAGCCCACGCCAC
TATGGTGACTTCATTGAGTTCCTGGGCAAAGCTCGAGAGACCTTCCTTCTGGCACCAGACGGGCACCTCC
AGTTCGCACAGTTCTTAGAAAACCTGAAACAGACGTACAAGGGAAAGAAGAAGTTGATGCTGTTGGTTCG
GGAACGGTTTGGCTGA

Translation (1101 aa):
MEPPAAKRSRGCPAGDEPGTGARRSRPEPLLDLSAKRVAESWAFEQVEERFSRVPEPVQKRIVFWSFPRS
EREICMYSSLGYQPPEGEQDTRVPFTRGLHLLQSGAVDRVLQVGFHLSGNIREVGGPGEPEHLYHVSISF
DRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHARQVELRLPISETLSQMNRDQLQKFVQYLISAHHTEV
LPTAQRLADEILLLGSEINLVHGAPDPTAGAGTEDANCWHLDEEQIQEQVKQLLSNGGHYGASQQLRSMF
SKVREMLRARDSNGARMLILMTEQFLQDPRLALWRQQGAGMTDKCRQLWDELGALWVCVILSPHCKPDER
SGWLQLLGTWDKLDVCPLEEGNYSLDIPSLQPALTSRTGSEDEEEVTAASPRRTVFSRALQAGELHWNDS
HLQRILASDSCGPTLTGSMGSDKPTFDPQGHPIWLGEPFPTACARVDTLRAHGYPHKALRLACAIINTLR
LQRRHQLESYKQQKKELLQKGATGVTSTEGWVGHPLDPIGCLCRALLEACRLEEEPHSLFPDSAPEKRKL
AYQHVLVPGSPGESYLALALEVALLGLGQQRALPEGLYAQDKVVRNEEQLLALLEEVELDERLVQVLRKQ
AGLLLEGGPFSGFGEVIFRESVPMHTCARYLFTALLPHDPDLAFRLALRAMRLPVLETTFPAGESHPNPL
DSIMSNRFPRWFILGHLETRQCELASTMLTAAKGDTKWLHAVLGSVQQNIHSPALLFKLAQDACKTATPA
SAPPDTVLLGIALELGLQVMRMTLNTMTWRRREMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIV
AVTGTTHATLLRLQLDTAGREELWACARTLALQCAMKDPQNCALPALTLCEKNHAAFEAAYQIVLDAAAG
GLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAVNDVLWACSLSHSLGRHELSAIVPL
IIRSIHCAPMLSDILRRWTLSAPGLGPLGARRATKPLGTDRAPLCQLLDAAVAAYITTSHSRLTHISPRH
YGDFIEFLGKARETFLLAPDGHLQFAQFLENLKQTYKGKKKLMLLVRERFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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