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Report for CCDS21001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21001.1 Public Mus musculus 7 Cyp2b9 23 108 98 CCDS HistoryNCBI Gene:13094Re-query CCDS DB by CCDS ID:21001.1Re-query CCDS DB by GeneID:13094See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082214.4 ENSMUSP00000080846.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082214.4Link to Ensembl Protein Viewer:ENSMUSP00000080846.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000082214Re-query CCDS DB by Protein ID:ENSMUSP00000080846
Original member Current member NCBI NM_010000.2 NP_034130.1 Accepted alive Link to Nucleotide Sequence:NM_010000.2Link to Protein Sequence:NP_034130.1Re-query CCDS DB by Nucleotide ID:NM_010000Re-query CCDS DB by Protein ID:NP_034130Link to BLAST:NP_034130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034130.1 491 P12790 491 100% 0 0

Chromosomal Locations for CCDS 21001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26173434 26173604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26186581 26186743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26186886 26187035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26187652 26187812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26198418 26198594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26199044 26199185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26200733 26200920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26201091 26201232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26210103 26210284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGATCCTAGTGTCCTGCTCCTCCTTGCTGTCCTTCTGAGCTTATTTCTACTCCTGGTCAGGGGCCATG
CAAAGATCCATGGCCATCTTCCACCAGGACCCCATCCTCTACCCCTCTTGGGGAACCTGTTGCAGATGGA
TAGAGGAGGCCTTCTTAAGTGTTTCATTCAGCTTCAAGAAAAACATGGAGATGTGTTCACAGTGCACTTG
GGACCGAGGCCCGTGGTTGTGTTGTGTGGGACACAGACGATAAGGGAGGCTCTGGTGGACCACGCTGAGG
CTTTTTCTGGCCGAGGGACCATTGCTGCAGCTCAGCTAGTTATGCAGGACTATGGTATATTTTTTGCCAG
TGGGCAACGCTGGAAGACCCTTCGGCGATTCTCTCTGGCCACCATGAAAGAGTTTGGAATGGGAAAGCGG
AGTGTGGAGGAGAGGATAAAGGAGGAGGCCCAATGTTTGGTGGAGGAATTGAAGAAATACCAGGGAGTGC
CCCTGGATCCCACCTTTCTCTTCCAGTGCATCACAGCCAACATCATCTGCTCCATTGTCTTTGGAGAGCG
TTTTGACTACACAGATGACCAGTTCCTTCATCTGCTGAATCTGATGTATAAGATCTTTTCACTCTTAAGC
TCATTCTCTGGTCAGATGTTTGAGCTCTTCTCTGGATTCCTGAAGTACTTTCCTGGTGTACACAGACAAA
TTGTCAAAAAACAGCAGGAACTCCTCGACTACATTGCCCATAGTGTGGAGAAGCACAAGGCCACCTTGGA
CCCCAGTGCTCCACGAGACTACATTGATACCTACCTTCTGAGGATGGAGAAGGAGAAGTCAAACCACAAC
ACAGAGTTCCATCACCAGAACCTCATGATGTCTGTGCTCTCTCTCTTCTTTGCTGGAACTGAGACCACAA
GCGCCACCCTCCACTATGGAGTCCTGCTCATGCTCAAGTACCCCCATGTCACAGAGAAAGTCCAAAAGGA
GATTGATCAGGTGATCGGCTCACACCGGCTACCAACTCTTGATGACCGCACCAAAATGCCATACACAGAT
GCAGTCATCCATGAGATTCAGAGATTTTCAGATCTTGTCCCAATTGGTCTACCACATAAAGTCATCAAAG
ACACACTGTTCCGAGGGTACCTGCTCCCCAAGAACACTGAGGTGTACCCCGTCCTTAGTTCAGCTCTACA
TGATCCACAGTACTTTGAACAACCAGACAAGTTCAATCCTGAGCACTTTCTAGATGCCAATGGGGCACTG
AAGAAATGTGAAGCTTTTCTGCCCTTCTCCACAGGAAAGCGCATTTGTCTTGGTGAAAGCATTGCCCGCA
ACGAATTGTTCATTTTCTTCACAACCATTCTCCAGAACTTCTCTGTGGCAAGCCCTGTTGCTCCAAAGGA
CATTGACCTCACTCCCAAAGAGAGTGGTATTGGAAAAATACCTCCAGCACACCAGATCTACTTCTTAGCC
CGCTAA

Translation (491 aa):
MDPSVLLLLAVLLSLFLLLVRGHAKIHGHLPPGPHPLPLLGNLLQMDRGGLLKCFIQLQEKHGDVFTVHL
GPRPVVVLCGTQTIREALVDHAEAFSGRGTIAAAQLVMQDYGIFFASGQRWKTLRRFSLATMKEFGMGKR
SVEERIKEEAQCLVEELKKYQGVPLDPTFLFQCITANIICSIVFGERFDYTDDQFLHLLNLMYKIFSLLS
SFSGQMFELFSGFLKYFPGVHRQIVKKQQELLDYIAHSVEKHKATLDPSAPRDYIDTYLLRMEKEKSNHN
TEFHHQNLMMSVLSLFFAGTETTSATLHYGVLLMLKYPHVTEKVQKEIDQVIGSHRLPTLDDRTKMPYTD
AVIHEIQRFSDLVPIGLPHKVIKDTLFRGYLLPKNTEVYPVLSSALHDPQYFEQPDKFNPEHFLDANGAL
KKCEAFLPFSTGKRICLGESIARNELFIFFTTILQNFSVASPVAPKDIDLTPKESGIGKIPPAHQIYFLA
R


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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