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Report for CCDS16459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16459.1 Public Mus musculus 2 Api5 23 108 98 CCDS HistoryNCBI Gene:11800Re-query CCDS DB by CCDS ID:16459.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028617.6 ENSMUSP00000028617.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028617.6Link to Ensembl Protein Viewer:ENSMUSP00000028617.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028617Re-query CCDS DB by Protein ID:ENSMUSP00000028617
Original member NCBI NM_007466.3 NP_031492.2 Updated not alive Link to Nucleotide Sequence:NM_007466.3Link to Protein Sequence:NP_031492.2Re-query CCDS DB by Nucleotide ID:NM_007466Re-query CCDS DB by Protein ID:NP_031492
Current member NCBI NM_007466.4 NP_031492.2 Accepted alive Link to Nucleotide Sequence:NM_007466.4Link to Protein Sequence:NP_031492.2Re-query CCDS DB by Nucleotide ID:NM_007466Re-query CCDS DB by Protein ID:NP_031492Link to BLAST:NP_031492.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031492.2 504 O35841 504 100% 0 0

Chromosomal Locations for CCDS 16459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 94413759 94413781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94418256 94418392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94418871 94418947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94420986 94421042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94421433 94421526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94422297 94422478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94423412 94423501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94424974 94425078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94425591 94425797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94426933 94427084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94427512 94427577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94428046 94428139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94429679 94429840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94437924 94437992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCCGACGGTGGAGGAGCTGTACCGCAACTACGGCATCCTCGCCGATGCCACGGAGCAAGTGGGCCAGC
ATAAAGATGCCTACCAAGTGATACTGGATGGCGTGAAAGGCGGCACCAAGGAAAAGCGATTAGCAGCTCA
GTTTATACCAAAATTCTTTAAGCATTTTCCAGAGCTGGCTGATTCTGCTATCAATGCACAGTTAGACCTC
TGTGAGGATGAAGATGTGTCAATACGACGTCAAGCAATTAAAGAGCTGCCTCAGTTTGCCACAGGAGAAA
ACCTTCCTAGAGTAGCAGATATACTGACCCAGCTTCTGCAGACAGATGACTCTGCAGAATTTAACCTGGT
GAACAATGCTCTGCTAAGTATATTTAAGATGGATGCAAAAGGAACGTTAGGTGGCTTGTTTAGCCAGATT
CTTCAAGGAGAAGACATTGTTAGAGAACGAGCAATTAAATTCCTGTCCACAAAACTCAAGACGCTCCCAG
ATGAGGTGTTGACTAAGGAAGTGGAGGAACTCATACTCACTGAGTCCAAGAAGGTCCTAGAAGACGTGAC
TGGTGAAGAGTTTGTTTTGTTCATGAAGATACTGTCTGGGTTGAAAAGCTTACAGACAGTGAGTGGACGA
CAGCAGCTGGTGGAGCTGGTGGCGGAACAGGCTGACCTGGAGCAGGCCTTCAGCCCCTCAGACCCCGACT
GTGTGGACAGACTACTGCAGTGCACGCGGCAGGCTGTGCCTCTCTTCTCCAAAAATGTGCATTCTACAAG
ATTTGTGACGTATTTCTGTGAGCAAGTTCTCCCTAACCTCAGCACCCTGACCACCCCAGTGGAAGGCCTC
GATATACAGCTGGAGGTATTAAAGTTGTTGGCAGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAG
AAACAAATTTAAGAAAACTGTTTGATAAGTTATTGGAGTATATGCCTCTCCCTCCAGAAGAAGCAGAAAA
TGGGGAGAATGCTGGTAATGAGGAGCCCAAGCTGCAGTTCAGTTATGTGGAGTGCTTATTGTACAGTTTT
CATCAGTTGGGGCGAAAACTTCCAGACTTCTTAACAGCCAAACTGAATGCAGAAAAACTCAAGGATTTCA
AAATTAGGTTGCAGTACTTTGCACGGGGCCTGCAGGTTTATATCAGACAACTTCGCTTGGCTCTCCAGGG
TAAAACAGGCGAGGCCTTAAAAACAGAGGAGAACAAGATAAAAGTTGTTGCACTGAAAATAACAAACAAT
ATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTCTTATAAGAGCACAGTAACATTGTCCTGGA
AACCTGTGCAGAAAGTTGAGATTGGGCAAAAGAGAACCAGTGAAGATACAAGTTCAGGTTCACCACCTAA
GAAGTCTCCAGGAGGACCAAAAAGAGATGCCAGACAGATTTATAATCCTCCGAGTGGAAAGTACAGCAGC
AATCTGAGCAACTTTAATTATGAGAGGAGCCTTCAGGGGAAATAG

Translation (504 aa):
MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDL
CEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQI
LQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGR
QQLVELVAEQADLEQAFSPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLSTLTTPVEGL
DIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSF
HQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNN
INVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRTSEDTSSGSPPKKSPGGPKRDARQIYNPPSGKYSS
NLSNFNYERSLQGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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