NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36104.1 Public Mus musculus 11 Urgcp 23 108 98 CCDS HistoryNCBI Gene:72046Re-query CCDS DB by CCDS ID:36104.1Re-query CCDS DB by GeneID:72046See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093362.11 ENSMUSP00000091053.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093362.11Link to Ensembl Protein Viewer:ENSMUSP00000091053.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093362Re-query CCDS DB by Protein ID:ENSMUSP00000091053
Original member Current member NCBI NM_178623.3 NP_848738.2 Accepted alive Link to Nucleotide Sequence:NM_178623.3Link to Protein Sequence:NP_848738.2Re-query CCDS DB by Nucleotide ID:NM_178623Re-query CCDS DB by Protein ID:NP_848738Link to BLAST:NP_848738.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848738.2 926 Q5NCI0-1 926 100% 0 0

Chromosomal Locations for CCDS 36104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5715685 5718263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5722802 5722840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5723111 5723161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5726348 5726418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5726831 5726857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5741097 5741110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGCGTCGCCGGGGATAGAAGTGGAATTACTGGTCAAAGGGCATTCAGATCTGGGAGAAGTGGCCCCAG
AAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGA
TGACTGCGGGTTCCATTATGGAGATGGTACAAACGAGGCTCAGGACAATGACTTCCCCACAGTGGAGAGA
AGCAGGCTTCAGGAGATGCTGTCCCTGTTGGGACTGGAGACATACCAGGCACAGAAGCTCACCCTCCAGG
ACTCCCTGCAGATCAGTTTTGACAGCATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCTTCCCTGGCA
TTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTGGACGTGCCTCCA
GAGGCCTGGCCTGCAGAGAAGGAGAGCCAGGCAGAGGAGGAGATGATGTACTGGGACCCAGCGGAGGACG
TCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCCCTGGATCTTCT
CTGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAAGATGTCCCTCTGTCAG
TTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTACCACACCTTTCTGCTCTGGGCCCTGCGGG
GTGTTGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCTGGGGAGTTTCCGAGAAGACAGTGTGGTCCT
GTCCAGGGTGCCCACGTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAAT
GCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATC
CTCGCGAGATCTCGGATGGGTTAGTAGAGATCTCCTGGTTTTTCCCCAGTGGTAAGGAGGACCTGGATGT
TTTCCCGGAGCCCATGGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAAGCTC
TTGACAGAAGTCTCCTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATACAAACTGCTGT
ACTCCATGAAGGAGTCAACCACAAAGTACTACTTCATCCTGAGTCCCTACCGAGGGAAACGGAACACGAA
CCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGTCAGC
AGCACGGACAGCGAGGGCTTCGTGAGGCGCATCCGAGCCATCATGTGCAGTGTGGCTCGCTCTCCCTGCA
GGAGGGTGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGA
GGAGTGTCAGAAGGCAAAGGACCGGATGGAGAAAATCCTCAGGAAGATCAAGGATGTGGACGCCTACAAG
AGAGACGAGCTGCGGCTGCAGGGCGAGCCTGCGAGGAGGGCCGCCCAAGCTGAAAGAGAGTTCTGCCAGC
TCCAGTGGGTCCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAGACGGCGCGTCCTTGAGCTCCGGGT
GCAGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGGAATAAGCAGCCCCTCCCCG
AGTGAGAGGCAGTACTTCCTGAGATGGATGGAGTGGGGCTTGGCTCGGCTTGGCCAGCCACGGCCAAGAC
AGCCTCCAGAGACCCTTCTCACCCTCAGACCAAAACTTGGTGGGCCCTCAGACTTGACGGAGCCACTCTG
GCCTGAGCCCTTGGGAGTGGAGCACTTCCTACGGGAGATGGGCCAGTTCTATGAAGCGGAGAGCTGCCTG
ATCGAGGCAGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGCTGTGGAACTGC
TGCTGGGTGGGCTGCCCCTGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTGTTCGATGGGTCACTGG
GCTTCTCAAGGAGCTGCATACCCGCCTAGACAGGAGATCTCGGCTAGTGGTTCTCTCTGCCCTGGGGGTG
CCTGGCACAGGGAAATCTACACTCCTTAACACCATGTTTGGCCTGAAATTTGCCACTGGGAGGAGCTGTA
GTCCCCGGGGGGCCTTCATGCAGCTCCTCCCTGTAGCTGAGGGCTTCAGTCAGGACCTGGGCTGTGACCA
GATCCTGGTAATAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCTCTGCTGGAGACAGGTTTGAACTG
GAGGCTTCCTTGGCCACACTGCTAATGGGGCTAAGTAATGTCACTGTGGTCAGTTTAGCTGAAACAAAGG
ACATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCTAGAAAAAATGGGGCACATGCCCAACTATCAGTT
TGTGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGAT
CCGCCAAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGACACTGGCGGGCC
TGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAG
CTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGAGATGCCTATTAGAAAACATCAGGAATGGCTTGTCC
AACCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCAGGCTGTGA

Translation (926 aa):
MASPGIEVELLVKGHSDLGEVAPEVKPSDSQTSVAIADLEWREMEGDDCGFHYGDGTNEAQDNDFPTVER
SRLQEMLSLLGLETYQAQKLTLQDSLQISFDSMKNWAPQVPKDLPWHFLRKLQALNAEARNTTMVLDVPP
EAWPAEKESQAEEEMMYWDPAEDVAADIYSFSELPMPDTPVNPLDLLCALLLSSDTFLQQEVLLKMSLCQ
FALPLVLPDSENHYHTFLLWALRGVVRTWWFQPLRSLGSFREDSVVLSRVPTFAFVRMDVSSNSKSQLLN
AVLSPARRQWDCFWHRDLNLGTNPREISDGLVEISWFFPSGKEDLDVFPEPMAFLNLRGDIGSHWLQFKL
LTEVSSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNRLIPVLKIDHSHVLVKVS
STDSEGFVRRIRAIMCSVARSPCRRVSVEDMAHAARKLGLRVDEDFEECQKAKDRMEKILRKIKDVDAYK
RDELRLQGEPARRAAQAEREFCQLQWVPEPPEKHRAELRRRVLELRVQQNGQEPTSGVQEFILGISSPSP
SERQYFLRWMEWGLARLGQPRPRQPPETLLTLRPKLGGPSDLTEPLWPEPLGVEHFLREMGQFYEAESCL
IEAGRLPAGQRRFAHFPGVAVELLLGGLPLELVDGATLSIPVRWVTGLLKELHTRLDRRSRLVVLSALGV
PGTGKSTLLNTMFGLKFATGRSCSPRGAFMQLLPVAEGFSQDLGCDQILVIDSGGLISGALASAGDRFEL
EASLATLLMGLSNVTVVSLAETKDIPPAVLHAFLRLEKMGHMPNYQFVYQNLHDLPVPSPKPRDRRQLLD
PPSDLSRATHLEKQGGGFRTLAGLAERQHVWHIPALWHGAPPMAAVSLGYSEAIFELKRCLLENIRNGLS
NQNQNIQQLIELLRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH