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Report for CCDS35984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35984.1 Public Mus musculus 10 Ap3d1 23 108 98 CCDS HistoryNCBI Gene:11776Re-query CCDS DB by CCDS ID:35984.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020420.8 ENSMUSP00000020420.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020420.8Link to Ensembl Protein Viewer:ENSMUSP00000020420.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020420Re-query CCDS DB by Protein ID:ENSMUSP00000020420
Original member NCBI NM_007460.2 NP_031486.1 Updated not alive Link to Nucleotide Sequence:NM_007460.2Link to Protein Sequence:NP_031486.1Re-query CCDS DB by Nucleotide ID:NM_007460Re-query CCDS DB by Protein ID:NP_031486
Current member NCBI NM_007460.3 NP_031486.1 Accepted alive Link to Nucleotide Sequence:NM_007460.3Link to Protein Sequence:NP_031486.1Re-query CCDS DB by Nucleotide ID:NM_007460Re-query CCDS DB by Protein ID:NP_031486Link to BLAST:NP_031486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031486.1 1199 O54774 1199 100% 0 0

Chromosomal Locations for CCDS 35984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80707888 80707983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80708458 80708537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80708747 80708868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80709201 80709286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80709400 80709488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80709767 80709956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80710420 80710467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80710689 80710832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80712112 80712207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80712596 80712667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80712765 80712930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80713557 80713630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80713973 80714160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80714247 80714322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80715108 80715179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80715871 80716012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80716474 80716619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80717699 80717930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80719009 80719388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80719667 80719812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80721120 80721168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80721591 80721640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80722913 80722962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80723533 80723606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80723691 80723830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80727054 80727183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80727882 80727989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80729978 80730058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80730874 80730954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80732851 80732946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80741896 80741991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3600 nt):
ATGGCCCTCAAGATGGTCAAGGGCAGTATCGACCGCATGTTCGATAAGAACCTGCAGGATCTGGTCCGCG
GCATCCGCAACCACAAGGAGGACGAGGCCAAGTACATCTCCCAGTGCATTGACGAGATCAAGCAGGAGCT
GAAGCAGGACAACATCGCTGTGAAGGCCAACGCTGTCTGCAAGCTCACCTACTTACAGATGCTTGGGTAC
GACATCAGCTGGGCTGCCTTCAACATCATTGAAGTCATGAGTGCCTCCAAGTTCACATTCAAGCGTGTTG
GCTACCTTGCGGCCTCCCAGTGCTTCCATGAAGGTACCGACGTCATCATGCTGACCACCAACCAGATCCG
AAAGGACCTGAGCAGCCCCAGCCAGTACGACACTGGAGTGGCACTGACTGGTCTGTCCTGTTTTGTCACC
CCAGATCTTGCCAGAGACCTGGCAAATGACATCATGACCCTGATGTCTCACACGAAGCCGTACATCAGGA
AGAAGGCAGTGCTGATCATGTACAAAGTATTCCTCAAGTACCCAGAGTCGCTGCGTCCTGCCTTTCCCCG
GCTTAAGGAGAAGCTGGAGGACCCAGACCCAGGGGTACAGTCTGCGGCTGTTAATGTCATCTGCGAGCTG
GCACGCCGCAACCCTAAAAACTACCTGTCTCTGGCGCCACTGTTTTTCAAGCTCATGACATCCTCCACCA
ACAACTGGGTCCTCATCAAGATCATCAAGCTGTTCGGTGCCCTGACTCCTCTGGAGCCCAGGCTGGGCAA
GAAGCTGATCGAGCCTCTCACCAACCTCATTCACAGCACCTCTGCCATGTCCCTGCTGTACGAGTGTGTG
AACACCGTAATTGCTGTGCTCATCTCACTGTCTTCTGGGATGCCCAACCACAGCGCCAGCATCCAGCTAT
GCGTTCAGAAGTTGAGGATACTGATAGAAGACTCCGACCAGAACTTAAAGTACCTGGGGCTGCTGGCCAT
GTCTAAAATCCTGAAGACACACCCCAAGTCTGTGCAGTCCCACAAGGACCTGATCCTGCAGTGCCTGGAT
GACAAGGACGAGTCCATCCGCCTGCGTGCACTTGACCTGCTCTATGGAATGGTGTCCAAGAAGAACCTGA
TGGAGATTGTGAAGAAGCTCATGACTCACGTGGACAAGGCTGAGGGCACCACCTATCGCGATGAACTGCT
CACCAAGATCATTGACATCTGTAGCCAGTCCAACTACCAGCACATCACCAACTTCGAGTGGTACATCAGC
ATCCTTGTGGAGCTGACAAGGCTGGAGGGCACCCGCCATGGCCACCTCATTGCTGCACAGATGCTGGACG
TGGCTATCCGGGTCAAGGCCATTCGCAAATTTGCTGTGTCGCAGATGTCCTCACTGCTTGACAGTGCTCA
CCTGGTAGCCAGCAGCACCCAACGCAATGGTATCTGTGAGGTGCTCTATGCTGCTGCCTGGATCTGCGGG
GAGTTCTCAGAGCACCTACAGGGGCCCCAGCAAACCCTGGAGGCCATGCTGCGGCCCAAGGTCACCACAC
TGCCCGGCCATATCCAGGCTGTGTATGTGCAGAACGTGGTAAAGCTGTACGCGTCCATCCTGCAGCAGAA
GGAGCAGGCCGCTGACACTGAGGCTGCACAAGAGGTCACCCAGCTACTGGTGGAGCGACTGCCACAGTTT
GTGCAGAGCGCCGACCTGGAGGTGCAGGAGCGGGCGTCTTGCATCCTGCAGCTGGTCAAGCATGTCCAGA
AGCTGCAAGCAAAAGGTGTGCCGGTGGCTGAGGAAGTGAGCGCCTTGTTTGCTGGTGAACTGAACCCTGT
GGCCCCCAAGGCTCAGAAAAAGGTCCCAGTTCCTGAAGGCCTAGACCTGGATGCCTGGATCAATGAGCCA
CCTTCAGACAGTGAGTCTGAGGATGAGAAACCCAAGGCCATCTTCCATGAAGAAGAGCCGAGGCACACTC
GGCGCCGGCAGCCTGAGGAGGATGAAGAGGAGCTGGCTCGGCGGCGAGAGGCCCGGAAGCAGGAACAAGC
CAACAACCCCTTCTACATCAAGAGCTCCCCATCCCCGCAGAAGCGATACCAGGATGCACCAGGTGTGGAA
CACATTCCTGTGGTACAGATCGACCTCTCAGTGCCTCTGAAAGTTCCAGGTATGCCCATGTCAGACCAGT
ATGTGAAGCTGGAGGAGCAGCGGCGACACCGGCAGCGGCTGGAGAAGGACAAGAAAAGGAAGAAGAAGGA
GAAGGGCAAGCGGCGCCACAGCTCTCTCCCCACGGAGAGCGATGAGGACATTGCCCCTGCCCAGCGTGTG
GACATTATCACTGAGGAGATGCCAGAGAATGCTTTGCCTAGTGACGAGGATGACAAAGACCCCAATGACC
CCTACAGGGCGCTGGACATTGACCTGGATAAACCCCTGGCTGACAGTGAGAAGCTGCCTGTCCAGAAACA
TAGAAATGCGGAGGCGGTGAAGTCCCCAGAGAAGGAGGGTGTGCTCGGGGTAGAGAAGAAGAGCAAGAAG
CCCAAGAAGAAGGAGAAGAAGACCAAAGAGAGAGAGAGAGAGAAGAAGGACAAGAAGGGTGAGGACTTAG
ACTTCTGGCTGTCCACCACCCCACCACCTGCTGCTGCCCCCATTCCTGCCCCGTCCACGGAAGAACTTGC
TGCAAGCACTATCACCTCCCCTAAGGATGAGTGTGAGGTTCTCAAAGGGGAAGAGGAGGACCACGTGGAT
CATGACCAAGAAAGGAAATCATCCCGGCACAAGAAGAAGAAACACAGAAAGGAGAAGGAGAAGGAGGAGA
GGCCACGAGACAAGAAGAAAGCTAAGAAGAAGCAGGTGGCACCTCTGGAGAATGGTGCGGCAGCAGAGGA
GGAGGAGGAGCCTATCCCGCCCATGTCCAGCTACTGCCTTCTGGCTGAGAGTCCCTACATTAAAGTGACA
TATGACATCCAAGCCAGCTTACAGAAGGACAGCCAAGTGACTGTGTCCATCATCCTGGAGAACCAGAGCA
GCAGCTTCCTGAAGAACATGGAGCTCAACGTGCTGGACTCTCTCAACACCAAGATGACCAGGCCAGAGGG
CTCATCGGTACACGACGGTGTGCCCGTGCCTTTCCAACTGCCTCCCGGCGTCTCCAATGAGGCCCAGTTT
GTGTTCACCATTCAGAGCATCGTCATGGCCCAGAAGCTCAAAGGCACACTGTCCTTCATTGCCAAGGATG
ATGAAGGAGCCACCCATGAGAAGTTGGACTTCCGGCTGCATTTCAGCTGTAGCTCGTACCTGATCACCAC
ACCCTGCTACAGCGATGCCTTTGCAAAGTTGCTAGAGTCAGGAGACCTGAGCATGAACTCCATCAAAGTC
GATGGCATTAGTATGTCTTTCCAGAATCTTCTGGCAAAGATCTGCTTCTACCACCATTTTTCCGTTGTGG
AGCGAGTAGACTCCTGTGCCTCCATGTACAGCCGCTCTATCCAGGGCCACCATGTCTGCCTGCTGGTGAA
GAAGGGCGAGAGCTCCGTGTCAGTAGATGGGAAGTGCAGCGATGCCACGTTGCTCAGCAGCCTGCTGGAG
GAAATGAAGACCACGTTGGCTCAGTGCTGA

Translation (1199 aa):
MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIKQELKQDNIAVKANAVCKLTYLQMLGY
DISWAAFNIIEVMSASKFTFKRVGYLAASQCFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVT
PDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICEL
ARRNPKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECV
NTVIAVLISLSSGMPNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLD
DKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQHITNFEWYIS
ILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSSLLDSAHLVASSTQRNGICEVLYAAAWICG
EFSEHLQGPQQTLEAMLRPKVTTLPGHIQAVYVQNVVKLYASILQQKEQAADTEAAQEVTQLLVERLPQF
VQSADLEVQERASCILQLVKHVQKLQAKGVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEP
PSDSESEDEKPKAIFHEEEPRHTRRRQPEEDEEELARRREARKQEQANNPFYIKSSPSPQKRYQDAPGVE
HIPVVQIDLSVPLKVPGMPMSDQYVKLEEQRRHRQRLEKDKKRKKKEKGKRRHSSLPTESDEDIAPAQRV
DIITEEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAEAVKSPEKEGVLGVEKKSKK
PKKKEKKTKEREREKKDKKGEDLDFWLSTTPPPAAAPIPAPSTEELAASTITSPKDECEVLKGEEEDHVD
HDQERKSSRHKKKKHRKEKEKEERPRDKKKAKKKQVAPLENGAAAEEEEEPIPPMSSYCLLAESPYIKVT
YDIQASLQKDSQVTVSIILENQSSSFLKNMELNVLDSLNTKMTRPEGSSVHDGVPVPFQLPPGVSNEAQF
VFTIQSIVMAQKLKGTLSFIAKDDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMNSIKV
DGISMSFQNLLAKICFYHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGESSVSVDGKCSDATLLSSLLE
EMKTTLAQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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