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Report for CCDS36742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36742.1 Public Mus musculus 13 Zcchc9 23 108 98 CCDS HistoryNCBI Gene:69085Re-query CCDS DB by CCDS ID:36742.1Re-query CCDS DB by GeneID:69085See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022121.12 ENSMUSP00000022121.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022121.12Link to Ensembl Protein Viewer:ENSMUSP00000022121.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022121Re-query CCDS DB by Protein ID:ENSMUSP00000022121
Original member Current member NCBI NM_145453.2 NP_663428.2 Accepted alive Link to Nucleotide Sequence:NM_145453.2Link to Protein Sequence:NP_663428.2Re-query CCDS DB by Nucleotide ID:NM_145453Re-query CCDS DB by Protein ID:NP_663428Link to BLAST:NP_663428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663428.2 271 Q8R1J3 271 100% 0 0

Chromosomal Locations for CCDS 36742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 91797136 91797254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91798823 91798891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91800611 91800703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91800866 91801016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 91805751 91806134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGACCAGGTGGGCTAGAGTTACTACTTCAAATAGTAAGCGACCCCTGTCAGCAACATCATGGGAGGACA
TGAAGAAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTCAAAGCAGTAGGCT
GCCCCTTAGAAATGACTCACCTCAAGCAAAACGCAAAAAGAACAAAAAGAAAAAAGAGTACTTGAATGAA
GACGTGAACGGCTTCATGGAGTACCTGAAGCAGAACTCACAGGTACTTCACAATGGACAGCTGATAGCAG
CTGACAGCCAGGAAGTGAGGGAAGAAATTGCCGTGGCCTTAAAGAAGGACAGTCGACGGGAAGGAAGGCG
GCTAAAGAGACAGGCGGCAAAGAAGAATGCAATGGTGTGTTTCCATTGTCGACAACCTGGCCACGGAATT
GCTGACTGTCCAGCTGTACTAGAGAGTCAGGACATGGGCACCGGCATTTGTTACCGCTGTGGGTCCACGG
AGCACGAGATGTCCAAGTGCAGAGCTAACGTAGACCCCGCGCTTGGTGAATTTCCTTTTGCAAAATGTTT
TGTCTGCGGAGAAATGGGACACCTGTCCAGATCCTGCCCTGATAATACCAAAGGAGTCTATGCTGATGGT
GGCAGCTGTAAACTCTGTGGCTCCGTGGAACATTTTAAGAAAGATTGCCGAGAAAATCAGAACTCAGATC
GGATCATCACGGTTGGTCGCTGGGCAAAGGGTATGAGTGCAGACTATGAAGACGTGCTGGATGTGCCCAA
ACTGCAGAAACCTAAAACCAAAGTACCCAAAGTTGTTAATTTTTGA

Translation (271 aa):
MTRWARVTTSNSKRPLSATSWEDMKKGSVERADQSLPNRKQCQSSRLPLRNDSPQAKRKKNKKKKEYLNE
DVNGFMEYLKQNSQVLHNGQLIAADSQEVREEIAVALKKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGI
ADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNTKGVYADG
GSCKLCGSVEHFKKDCRENQNSDRIITVGRWAKGMSADYEDVLDVPKLQKPKTKVPKVVNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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