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Report for CCDS28186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28186.1 Public Mus musculus 16 Boc 23 108 98 CCDS HistoryNCBI Gene:117606Re-query CCDS DB by CCDS ID:28186.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114634.2 ENSMUSP00000110281.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114634.2Link to Ensembl Protein Viewer:ENSMUSP00000110281.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114634Re-query CCDS DB by Protein ID:ENSMUSP00000110281
Original member Current member NCBI NM_172506.2 NP_766094.1 Accepted alive Link to Nucleotide Sequence:NM_172506.2Link to Protein Sequence:NP_766094.1Re-query CCDS DB by Nucleotide ID:NM_172506Re-query CCDS DB by Protein ID:NP_766094Link to BLAST:NP_766094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766094.1 1110 Q6AZB0-1 1110 99.9099% 0 1

Chromosomal Locations for CCDS 28186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44485612 44485799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44486712 44486902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44487350 44487429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44487617 44487852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44488510 44488731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44490140 44490262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44490577 44490682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44491172 44491353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44491693 44491899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44492308 44492418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44492813 44492972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44496252 44496559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44499401 44499673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44500350 44500643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44501646 44501789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44503529 44503675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44520225 44520503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44521159 44521240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3333 nt):
ATGACGACGTGCCGAAGAGAGCGGCCTATACTTACACTGCTTTGGATTCTCATGGCCACAGCAGGCTGCC
TTGCTGATTTGAATGAGGTTCCTCAGGTCACAGTCCAGCCCATGTCCACTGTCCAGAAGCTGGGAGGAAC
TGTGATCCTGGGCTGTGTGGTGGAGCCACCATGGATGAACGTGACTTGGCGCTTCAACGGAAAGGAGCTA
AATGGCTCTGATGATGCTCTGGGTGTCTTCATCACCCGTGGGACCCTTGTCATTGCTGCCCTCAACAACC
ACACTGTGGGACGGTACCAGTGTGTGGCACGGATGCCTGCAGGAGCTGTGGCCAGTGTGCCAGCCACAGT
GACGCTAGCCAATCTCCAGGACTTTAAATTAGATGTGCAGCATGTGATTGAAGTAGACGAGGGGAACACA
GCCGTCATTGCCTGCCACCTGCCTGAGAGCCACCCAAAAGCCCAGGTCCGGTACAGTGTCAAACAGGAGT
GGCTGGAGGCCTCTAGAGACAACTACCTGATCATGCCATCCGGGAATCTCCAAATTGTCAATGCCAGCCA
AGAGGACGAAGGCATGTACAAGTGTGCCGCCTACAACCCGGTGACCCAGGAAGTGAAAACCTCCGGCTCC
GGCGACAGGCTGCGCGTGCGCCGGTCCACTGCTGAGGCTGCCCGCATCATCTACCCACTGGAAGCCCAGA
CCGTCATTGTCACCAAAGGCCAGAGTCTCATACTGGAGTGTGTGGCCAGTGGAATCCCACCACCTCGAGT
CACATGGGCCAAGGATGGGTCCAGCATTGCTGCCTATAACAAGACTCGCTTCCTGCTGAGTAATTTGCTT
ATTGACACCACCAGCGAGGAGGACTCAGGCACCTACCGATGTATGGCCAGCAATGGGGTTGGGGATCCTG
GGGCAGCAGTCATCCTCTACAATGTCCAGGTGTTCGAACCCCCTGAGGTCACGGTGGAGCTGTCCCAGCT
GGTCATCCCATGGGGCCAGAGTGCAAAGCTCACCTGTGAGGTTCGAGGAAACCCCCCACCCTCTGTACTA
TGGCTGAGGAATGCAGTGCCCCTCACCTCCAGCCAGCGCCTCCGGCTGTCACGTAGAGCCCTGCGGGTGG
TCAGTGTTGGGCCAGAGGACGAAGGCGTGTACCAGTGCATGGCTGAGAATGCGGTTGGCAGTGCCCACGC
TGTGGTCCAACTGAGGACCGCCCGGCCAGACACAACCCTGAGACCCGGGAGGGATACCAAGCCGATTGCT
GCCACACCCCCCATGCCACCCTCCAGACCCAGCAGACCTGACCAGATGCTTCGGGAACAACCGGGGCTTG
TTAAGCCCCCAACGTCGTCGGTACAGCCTACTTCCCTGAAGTGCCCGGGAGAAGAGCAGGTAGCCCCTGC
AGAGGCACCTATCATCCTCAGCTCACCCCGGACCTCCAAGACGGACTCCTATGAGCTGGTGTGGCGGCCT
CGCCATGAGGGGAGCAGCCGGACACCCATCCTGTACTACGTAGTGAAGCATCGTAAGGTCACGAACTCCT
CTGACGACTGGACCATTTCTGGCATTCCAGCCAACCAGCACCGCCTCACCCTGACCAGGCTTGACCCTGG
AAGCTTGTACGAAGTGGAGATGGCAGCCTACAACTGTGCTGGCGAGGGCCAGACAGCTATGGTCACCTTC
CGAACAGGACGGCGGCCCAAACCTGAGATCGTGGCCAGTAAGGAGCAGCAGATCCAGAGAGATGACCCTG
GTGCCAGTCTCCAGAGCAGCAGCCAGCCTGACCATGGCCGCCTCTCCCCCCCAGAAGCTCCAGACAGACC
CACCATCTCCACAGCTTCTGAGACCTCCGTGTACGTAACCTGGATTCCCCGAGGGAACGGCGGCTTCCCG
ATTCAGTCTTTCCGTGTAGAGTACAAGAAGCTAAAAAAAGTGGGAGATTGGATACTGGCTACCAGTGCCA
TACCTCCCTCGAGGCTCTCTGTGGAGATCACAGGCCTAGAGAAAGGTATTTCTTACAAGTTCCGAGTTCG
TGCTTTGAACATGTTAGGGGAGAGTGAGCCCAGTGCTCCCTCCCGGCCCTACGTGGTGTCAGGCTACAGT
GGCCGTGTATATGAGAGGCCCGTGGCAGGACCTTACATCACCTTCACTGATGCAGTCAATGAGACCACTA
TTATGCTCAAGTGGATGTATATCCCAGCCAGTAACAACAACACCCCAATCCATGGCTTCTATATCTACTA
CCGACCCACAGACAGTGACAATGACAGTGACTACAAGAAGGACATGGTAGAAGGGGACAGGTACTGGCAC
TCCATCAGCCACCTGCAGCCAGAGACTTCCTATGACATTAAAATGCAGTGCTTCAATGAAGGAGGGGAGA
GCGAGTTCAGCAATGTCATGATCTGCGAGACCAAAGCTCGGAAATTTTCTGGTCAGCCTGGAAGACCCCC
ACCCTTGACTCTAGCTCCACCACAGCCTCCGCCCCTAGAAACCATGGAACGGCCGGTGGGCACTGGAGCC
ATGGTGGCACGGGCCAGCGACCTGCCCTATCTGATTGTCGGGGTTGTTCTGGGCTCTATAGTCCTCATCA
TCGTCACCTTCATCCCCTTCTGCCTATGGAGGGCCTGGTCTAAGCAGAAACACACAACAGATCTGGGTTT
TCCTCGGAGTGCCCTCCTGTCTTCTTCGTGCCAGTACACAATGGTGCCATTGGAGGGACTTCCAGGTCAC
CAAGCCAACGGGCAGCCCTACCTTGGTGGCGTCAGTGGACGGGCCTGTGTCAGTCGAGTGCACGGAAGCA
GGGGCTGCCCTGCTGCTACAGTGGGCTGTCCAGGCAGGAAGCCTCAGCAGCACTGCCCAGGGGAGCTTGC
CCAGCAGCGGGAAGACACCAACAGCCAACTGAGGCAGCCCATTGTTAGCAACGGATATGACCTCCAGAAC
CAGCAGGTTGCCAGAGGTCCCCAGTGTGCCTCAGGAGTAGGAGCTTTCTTATACACGCTGCCTGATGACT
CAACTCACCAGCTGCTCCAACCTCAAGACTGCTGTCACCTCCAGAAGCAACCCGTCACCACATGCCAAAC
AGCAGTGAGGCGAACGTCTGAAAGTCCTGGACTAGAATCTTCATGGGACCCTCCATATCATTCAGGGCCC
CAGTGCTGTTTAGGTCTTGTACCAGTTGAAGAAGTAGACAGTTCTGACTCCTGCCAAGTGGGTGGAGGAG
ACTGGAGTTCCCAGCATCCATCAGGGACCTACACAGGACAGGAACGTGGGATGCGGTTCTCGCCTAGCCC
ATCAGTTCATGTGTCCTTTGAAACACCACCTCCCACAATTTAG

Translation (1110 aa):
MTTCRRERPILTLLWILMATAGCLADLNEVPQVTVQPMSTVQKLGGTVILGCVVEPPWMNVTWRFNGKEL
NGSDDALGVFITRGTLVIAALNNHTVGRYQCVARMPAGAVASVPATVTLANLQDFKLDVQHVIEVDEGNT
AVIACHLPESHPKAQVRYSVKQEWLEASRDNYLIMPSGNLQIVNASQEDEGMYKCAAYNPVTQEVKTSGS
GDRLRVRRSTAEAARIIYPLEAQTVIVTKGQSLILECVASGIPPPRVTWAKDGSSIAAYNKTRFLLSNLL
IDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVELSQLVIPWGQSAKLTCEVRGNPPPSVL
WLRNAVPLTSSQRLRLSRRALRVVSVGPEDEGVYQCMAENAVGSAHAVVQLRTARPDTTLRPGRDTKPIA
ATPPMPPSRPSRPDQMLREQPGLVKPPTSSVQPTSLKCPGEEQVAPAEAPIILSSPRTSKTDSYELVWRP
RHEGSSRTPILYYVVKHRKVTNSSDDWTISGIPANQHRLTLTRLDPGSLYEVEMAAYNCAGEGQTAMVTF
RTGRRPKPEIVASKEQQIQRDDPGASLQSSSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFP
IQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGYS
GRVYERPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWH
SISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARKFSGQPGRPPPLTLAPPQPPPLETMERPVGTGA
MVARASDLPYLIVGVVLGSIVLIIVTFIPFCLWRAWSKQKHTTDLGFPRSALLSSSCQYTMVPLEGLPGH
QANGQPYLGGVSGRACVSRVHGSRGCPAATVGCPGRKPQQHCPGELAQQREDTNSQLRQPIVSNGYDLQN
QQVARGPQCASGVGAFLYTLPDDSTHQLLQPQDCCHLQKQPVTTCQTAVRRTSESPGLESSWDPPYHSGP
QCCLGLVPVEEVDSSDSCQVGGGDWSSQHPSGTYTGQERGMRFSPSPSVHVSFETPPPTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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