NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22528.1 Public Mus musculus 8 Ces1d 23 108 98 CCDS HistoryNCBI Gene:104158Re-query CCDS DB by CCDS ID:22528.1Re-query CCDS DB by GeneID:104158See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034172.7 ENSMUSP00000034172.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034172.7Link to Ensembl Protein Viewer:ENSMUSP00000034172.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034172Re-query CCDS DB by Protein ID:ENSMUSP00000034172
Original member Current member NCBI NM_053200.2 NP_444430.2 Accepted alive Link to Nucleotide Sequence:NM_053200.2Link to Protein Sequence:NP_444430.2Re-query CCDS DB by Nucleotide ID:NM_053200Re-query CCDS DB by Protein ID:NP_444430Link to BLAST:NP_444430.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444430.2 565 Q8VCT4 565 100% 0 0

Chromosomal Locations for CCDS 22528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93166255 93166438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93169721 93169793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93171020 93171151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93175031 93175178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93176166 93176246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93178031 93178171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93181525 93181563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93184958 93185062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93186014 93186118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93187743 93187896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93189462 93189595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93192761 93192905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93194877 93195081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93197668 93197719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGGCCTCTACCCTCTGATATGGCTTTCTCTTGCTGCGTGCACAGCTTGGGGGTACCCATCCTCACCAC
CTGTGGTGAACACTGTTAAAGGCAAAGTCCTGGGGAAGTATGTCAATTTGGAAGGATTCACACAGCCTGT
GGCTGTTTTCCTGGGAGTCCCCTTTGCCAAGCCCCCTCTTGGCTCCTTGAGATTTGCTCCACCACAGCCT
GCAGAGCCCTGGAGCTTCGTGAAGAACACCACCTCCTACCCGCCTATGTGCTCTCAGGATGCTGTTGGAG
GGCAGGTGCTCTCAGAGCTCTTCACCAACAGGAAGGAGAACATTCCTTTACAGTTTTCTGAAGACTGCCT
CTACCTGAATATTTACACTCCTGCTGACTTGACAAAGAACAGCAGACTACCAGTGATGGTGTGGATCCAT
GGAGGTGGACTGGTGGTGGGCGGAGCATCCACCTATGATGGACTGGCCCTCTCTGCCCATGAAAATGTGG
TGGTGGTGACCATTCAGTATCGCCTTGGCATCTGGGGATTCTTCAGCACTGGGGATGAACACAGTCGGGG
AAACTGGGGTCACTTGGACCAGGTGGCTGCACTACGCTGGGTCCAGGACAACATTGCCAACTTTGGGGGC
AACCCAGGCTCGGTGACCATCTTTGGAGAGTCAGCAGGAGGTTTCAGTGTCTCTGTTCTTGTCTTGTCTC
CTTTGGCCAAGAACCTCTTCCACAGGGCCATTTCTGAGAGTGGTGTGTCCCTCACTGCTGCTCTGATTAC
AACAGATGTAAAGCCCATTGCTGGTCTGGTTGCTACTCTTTCTGGGTGTAAAACTACCACATCAGCTGTT
ATGGTTCATTGCCTGCGCCAGAAGACAGAGGATGAACTACTGGAGACCTCACTAAAATTGAATCTTTTTA
AACTGGACTTACTTGGAAATCCAAAAGAGAGCTATCCCTTCCTCCCTACTGTGATTGATGGAGTAGTTCT
GCCAAAGGCACCAGAAGAGATCCTGGCTGAGAAGAGTTTCAGCACTGTCCCCTACATAGTGGGCATCAAC
AAGCAAGAGTTTGGCTGGATCATTCCAACGCTTATGGGCTATCCACTCGCTGAAGGCAAACTGGACCAGA
AGACAGCCAATTCTCTCTTGTGGAAGTCCTACCCAACACTTAAAATCTCTGAGAATATGATTCCAGTGGT
CGCTGAGAAGTATTTAGGAGGGACAGATGACCTCACCAAAAAGAAAGACCTGTTCCAGGACTTGATGGCT
GATGTGGTATTTGGTGTCCCATCAGTGATTGTGTCTCGAAGTCACAGAGATGCTGGAGCCTCCACCTATA
TGTATGAGTTTGAGTATCGCCCAAGCTTTGTATCGGCCATGAGACCCAAGGCAGTAATAGGAGACCATGG
TGATGAGATCTTCTCAGTATTTGGATCTCCATTTTTAAAAGATGGTGCCTCAGAAGAGGAGACCAACCTC
AGCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGGAATGGGAACCCCAATGGTGGAGGGCTGCCCC
ACTGGCCAGAATATGACCAGAAGGAAGGGTATCTGAAGATTGGTGCCTCAACTCAGGCAGCCCAGAGGCT
GAAGGACAAAGAAGTGAGTTTTTGGGCTGAGCTCAGGGCCAAGGAGTCAGCCCAGAGGCCATCCCACAGG
GAACATGTTGAGCTCTGA

Translation (565 aa):
MGLYPLIWLSLAACTAWGYPSSPPVVNTVKGKVLGKYVNLEGFTQPVAVFLGVPFAKPPLGSLRFAPPQP
AEPWSFVKNTTSYPPMCSQDAVGGQVLSELFTNRKENIPLQFSEDCLYLNIYTPADLTKNSRLPVMVWIH
GGGLVVGGASTYDGLALSAHENVVVVTIQYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIANFGG
NPGSVTIFGESAGGFSVSVLVLSPLAKNLFHRAISESGVSLTAALITTDVKPIAGLVATLSGCKTTTSAV
MVHCLRQKTEDELLETSLKLNLFKLDLLGNPKESYPFLPTVIDGVVLPKAPEEILAEKSFSTVPYIVGIN
KQEFGWIIPTLMGYPLAEGKLDQKTANSLLWKSYPTLKISENMIPVVAEKYLGGTDDLTKKKDLFQDLMA
DVVFGVPSVIVSRSHRDAGASTYMYEFEYRPSFVSAMRPKAVIGDHGDEIFSVFGSPFLKDGASEEETNL
SKMVMKFWANFARNGNPNGGGLPHWPEYDQKEGYLKIGASTQAAQRLKDKEVSFWAELRAKESAQRPSHR
EHVEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH