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Report for CCDS18248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18248.1 Public Mus musculus 4 Ambp 23 108 98 CCDS HistoryNCBI Gene:11699Re-query CCDS DB by CCDS ID:18248.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030041.4 ENSMUSP00000030041.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030041.4Link to Ensembl Protein Viewer:ENSMUSP00000030041.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030041Re-query CCDS DB by Protein ID:ENSMUSP00000030041
Original member NCBI NM_007443.4 NP_031469.1 Updated not alive Link to Nucleotide Sequence:NM_007443.4Link to Protein Sequence:NP_031469.1Re-query CCDS DB by Nucleotide ID:NM_007443Re-query CCDS DB by Protein ID:NP_031469
Current member NCBI NM_007443.5 NP_031469.1 Accepted alive Link to Nucleotide Sequence:NM_007443.5Link to Protein Sequence:NP_031469.1Re-query CCDS DB by Nucleotide ID:NM_007443Re-query CCDS DB by Protein ID:NP_031469Link to BLAST:NP_031469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031469.1 349 Q07456 349 100% 0 0

Chromosomal Locations for CCDS 18248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63143375 63143400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63143667 63143840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63144151 63144318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63145265 63145346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63148702 63148748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63149419 63149520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63150328 63150444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63151454 63151530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63152584 63152726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63153942 63154055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGCAGGGTCTCAGGACCCTGTTCCTGCTGCTGACTGCCTGCCTCGCTTCGAGGGCTGACCCTGCGTCAA
CACTGCCAGATATCCAGGTTCAGGAGAACTTCAGTGAGTCCCGGATCTATGGAAAATGGTACAACCTGGC
GGTGGGATCCACCTGCCCGTGGCTGAGCCGCATTAAGGACAAGATGAGCGTGAGCACGCTGGTGCTGCAG
GAGGGGGCGACAGAAACAGAGATCAGCATGACCAGTACTCGATGGCGGAGAGGTGTCTGTGAGGAGATCA
CTGGGGCGTACCAGAAGACGGACATCGATGGAAAGTTCCTCTACCACAAATCCAAATGGAACATAACCTT
GGAATCCTATGTGGTCCACACCAACTATGACGAATATGCCATTTTCCTTACCAAGAAGTCCAGCCACCAC
CACGGGCTCACCATCACTGCCAAGCTCTATGGTCGGGAGCCACAGCTGAGGGACAGCCTTCTGCAGGAGT
TCAAGGATGTGGCCCTGAATGTGGGCATCTCTGAGAACTCCATCATTTTTATGCCTGACAGAGGGGAATG
TGTCCCTGGGGATCGGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGGCGGGCAGTGCTGCCCCAAGAG
AGTGAGGGGTCAGGGACTGAGCCACTAATAACTGGGACCCTCAAGAAAGAAGACTCCTGCCAGCTCAATT
ACTCAGAAGGCCCCTGCCTAGGGATGCAAGAGAGGTATTACTACAACGGCGCTTCCATGGCCTGCGAGAC
CTTTCAATATGGGGGTTGCCTAGGCAACGGCAACAACTTCATCTCTGAGAAGGACTGTCTGCAGACATGT
CGGACCATAGCGGCCTGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCAT
TTGATGCAGCACAAGGGAAGTGCATCCAATTCCACTACGGGGGCTGCAAAGGCAACGGCAACAAATTCTA
CTCTGAGAAGGAATGCAAAGAGTACTGTGGAGTCCCTGGTGATGGGTACGAGGAACTAATACGCAGTTGA

Translation (349 aa):
MQGLRTLFLLLTACLASRADPASTLPDIQVQENFSESRIYGKWYNLAVGSTCPWLSRIKDKMSVSTLVLQ
EGATETEISMTSTRWRRGVCEEITGAYQKTDIDGKFLYHKSKWNITLESYVVHTNYDEYAIFLTKKSSHH
HGLTITAKLYGREPQLRDSLLQEFKDVALNVGISENSIIFMPDRGECVPGDREVEPTSIARARRAVLPQE
SEGSGTEPLITGTLKKEDSCQLNYSEGPCLGMQERYYYNGASMACETFQYGGCLGNGNNFISEKDCLQTC
RTIAACNLPIVQGPCRAFIKLWAFDAAQGKCIQFHYGGCKGNGNKFYSEKECKEYCGVPGDGYEELIRS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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