NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16455.1 Public Mus musculus 2 Alx4 23 108 98 CCDS HistoryNCBI Gene:11695Re-query CCDS DB by CCDS ID:16455.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042078.9 ENSMUSP00000047962.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042078.9Link to Ensembl Protein Viewer:ENSMUSP00000047962.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042078Re-query CCDS DB by Protein ID:ENSMUSP00000047962
Original member Current member NCBI NM_007442.3 NP_031468.1 Accepted alive Link to Nucleotide Sequence:NM_007442.3Link to Protein Sequence:NP_031468.1Re-query CCDS DB by Nucleotide ID:NM_007442Re-query CCDS DB by Protein ID:NP_031468Link to BLAST:NP_031468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031468.1 399 O35137 399 100% 0 0

Chromosomal Locations for CCDS 16455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 93642659 93643088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93668355 93668665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93675296 93675424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93677232 93677561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGAACGCTGAGACTTGCGTCTCTTACTGCGAGTCCCCGGCCGCTGCCATGGACGCCTACTACAGCCCGG
TGTCGCAGAGCCGGGAAGGTTCGTCGCCTTTTAGGGGATTCCCAGGAGGCGACAAGTTCGGTACAACTTT
TCTGTCGGCCGGGGCCAAAGGACAGGGATTCGGGGACGCCAAGAGCCGGGCCCGCTACGGCGCGGGGCAG
CAGGACCTGGCGGCACCGCTGGAGAGCAGCTCCGGGGCGCGGGGATCCTTTAACAAGTTCCAGCCGCAGC
CGCCCACCCCACAGCCGCCGCCCGCTCCACCCGCGCCGCCTGCGCATCTCTACTTGCAGAGGGGCGCCTG
CAAAACGCCCCCGGACGGTAGCCTCAAGCTCCAGGAGGGCAGCGGCGGCCACAACGCGGCCTTGCAGGTC
CCCTGCTACGCCAAAGAGAGCAACCTGGGTGAGCCAGAGTTGCCTCCTGACTCTGAACCCGTGGGCATGG
ACAACAGCTACCTCAGTGTGAAGGAGACAGGGGCCAAGGGGCCCCAGGACCGGGCCAGCGCTGAAATACC
AAGCCCCCTGGAAAAGACCGATTCTGAGAGTAACAAAGGCAAGAAGCGGCGGAACCGAACCACCTTCACT
AGCTACCAGCTGGAAGAGCTGGAGAAAGTCTTCCAGAAGACACACTACCCTGATGTGTATGCACGGGAGC
AGCTGGCTATGAGGACCGACCTCACCGAGGCCCGTGTGCAGGTTTGGTTCCAGAACCGGAGGGCCAAGTG
GCGAAAGAGGGAGCGCTTTGGGCAGATGCAGCAGGTCCGGACCCACTTCTCCACGGCCTATGAGTTGCCC
CTCCTCACCCGGGCTGAGAACTACGCCCAGATTCAGAACCCATCCTGGATTGGCAACAATGGGGCTGCCT
CGCCAGTGCCAGCCTGTGTGGTCCCCTGTGACCCGGTACCAGCCTGTATGTCCCCTCACGCTCACCCTCC
TGGCTCCGGGGCCAGCAGCGTCTCCGACTTCTTGAGTGTCTCTGGAGCTGGCAGTCACGTGGGCCAGACA
CACATGGGCAGCCTGTTTGGAGCAGCTGGCATCAGTCCGGGCCTCAATGGCTACGAGATGAACGGCGAGC
CAGACCGCAAGACCTCAAGCATCGCTGCCTTGCGCATGAAGGCCAAGGAGCACAGTGCAGCCATCTCTTG
GGCCACATGA

Translation (399 aa):
MNAETCVSYCESPAAAMDAYYSPVSQSREGSSPFRGFPGGDKFGTTFLSAGAKGQGFGDAKSRARYGAGQ
QDLAAPLESSSGARGSFNKFQPQPPTPQPPPAPPAPPAHLYLQRGACKTPPDGSLKLQEGSGGHNAALQV
PCYAKESNLGEPELPPDSEPVGMDNSYLSVKETGAKGPQDRASAEIPSPLEKTDSESNKGKKRRNRTTFT
SYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELP
LLTRAENYAQIQNPSWIGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVSDFLSVSGAGSHVGQT
HMGSLFGAAGISPGLNGYEMNGEPDRKTSSIAALRMKAKEHSAAISWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH