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Report for CCDS36665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36665.1 Public Mus musculus 13 Secisbp2 23 108 98 CCDS HistoryNCBI Gene:75420Re-query CCDS DB by CCDS ID:36665.1Re-query CCDS DB by GeneID:75420See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040117.14 ENSMUSP00000045740.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040117.14Link to Ensembl Protein Viewer:ENSMUSP00000045740.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040117Re-query CCDS DB by Protein ID:ENSMUSP00000045740
Original member Current member NCBI NM_029279.2 NP_083555.1 Accepted alive Link to Nucleotide Sequence:NM_029279.2Link to Protein Sequence:NP_083555.1Re-query CCDS DB by Nucleotide ID:NM_029279Re-query CCDS DB by Protein ID:NP_083555Link to BLAST:NP_083555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083555.1 858 Q3U1C4 858 100% 0 0

Chromosomal Locations for CCDS 36665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51651785 51651820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51652607 51652755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51654386 51654635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51655099 51655240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51656881 51657110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51662621 51662699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51665272 51665474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51670807 51670929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51673070 51673159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51673888 51674029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51676287 51676453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51677141 51677279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51678834 51678990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51679733 51679953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51682000 51682154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51682444 51682633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51683278 51683381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGCGTCGGAGCGGCCGCGGGAGCCGGACGGCGAGGATAGCATCAAGTTGTCAGCTGATGTCAAACCAT
TCGTCCCTAAGTTTGCTGGGCTCAACGTGGCGTGGTCAGAGTCCTCAGAGACACGTGTCTTCCCAGGCTG
TGCGGCCACCTACTATCCATTTGTACAGGAACCACCAGCAGCTGAACAGAAAATGTATCCCGAAGACATG
GCTTTCGGAGCCCCCACCTTTCCAGCACAGTACGTGTCTTCTGAGATAGCGCTGCATCCTTTTGCCTATC
CCACTTACACCCTAGAGTCCGCACAGAGTGTTTGCTCAGTGCCAACCCTGCAGTACGACTACAGCCAAGC
ACGGTGTCACCCAGGCTTTCGGACAGCAAAGCCCCGGCATGAGCACGTGTGCCCTCCACCTCAGGAAGCA
AAAGGTGTATTTAAGAAAAAACCCTCTGATGAGAGAAGAGCATGTGAAGAGCAAAAGTCAAGCAGCAGAA
GGGCTGACAATGCGGTGCCCTGTGAGGCGAGACCAGCCAGGGGGTCCAGTCACCTGTCCTCTCGAACTGA
GAGCAGTTTGAAATCTGATGGTTACCACAAGCGACCCGACCGCAAGTCCAGAATCCTTGCGAAGAGTGCA
TCTACCTCTAAACCTGAATTTGAGTTTAGTAGGTTAGACTTTCCTGAACTGCAGAGTCCAAAGAACAGTA
ACATGCCAGAGACACAGAAGCCGCCCAGGTGGGGGCCTCTTGGCCCTGCTGCCAGTAACATGCCTCTCCT
AGGAGACGTCGGCAAGCCCGTCGCAGATATGGTAGAGGGCAAAATGGTGAAGAGCGATCACACTGATGGA
GCTGTGACCAGTAATGCCACTACCAGTTCCCCTTCATGTACCCAAGAGTTGTCTTGGACACCAATGGGTT
ATATTGTTCGGCAGACAGTGTCTTCAGATTCAGCAGCAGCCACTGAAAATGTGACTTCCATGATAAACCT
AAAGAAGACTACTTCATCAGCTGATGCTAAAAATGTTAGTGTGACATCTGAGGCTTTATCTTCAAATCCT
TCCTACAACAGAGAAAAGCGTGTTTATCCTGCTCCAAAGGCCAAAGCATCACAAGGAGGTGAACTTGAAC
AAAACGAAAGCTCCAAAAAGAATAAGAAAAAGAAAGAGAAGTCTAAACCGAGTTATGAAGTCCTGACGGT
TCAGGAGCCGCCAAGGATTGAAGATGCAGAGGAATTCCCCAACCTGTCAGTTGCGTCGGAAAGAAGACAC
AGAGGGCAATCACCGAAGCTTCACAGTAAACAGCAGACGCAGAATGAATTTAAAACAAGTGGGAAGAAGA
GCCAGGTCCCAGTGCAGCTGGACCTGGGGGGCATGCTGGCCGCGCTGGAGAAGCAGCAGCAGCAGCAGCA
CGCCTCGCACGCCAAGCCATCCTCCAGACCCGTCGTGTTCTCAGTTGGAGCAGTGCCAGTCCTGTCCAAG
GATGCCTCCTCCAGTGAGAGGGGACGCCGCTCCAGTCAGATGAAGACCCCACACAACCCCCTGGACTCCA
GTGCCCCCCTGATGAAGAAGGGGAAGCAGAGGGAGATACCTAAGGCCAAGAAGCCCACCTCACTGAAGAA
GATAATTTTGAAAGAACGGCAAGAGAGGATGCAGCAGCGACTCCAAGAAAGTGCTGTGAGCCTGACGGTG
GCCAGTGATGACTCACAGGATGTGGAGAGTGGCGCCAGTAACCAAACCCCCAGTCAGGACAACCCCACAG
GTCCAGAGAAGACAGAAGAATCAGTGTCTTCTACACCTGTGGTTGAGGGTGAGTCAGAGGAGCCAGCTGG
CACAGAGTTCCAGAGGGACCCAGAGGCTTGCCAGCCTGCCCCTGACAGTGCCACCTTCCCCAAGATCCAC
AGCCGGAGGTTCCGGGACTACTGCAGCCAGATGCTTAGTAAAGAAGTAGATGCTTGTGTCACGGGTCTGC
TCAAGGAGCTGGTGCGCTTCCAAGACCGCATGTACCAGAAGGATCCCGTCAAGGCCAAGACAAAACGGCG
GCTCGTGCTGGGGCTGAGGGAGGTCCTGAAACACCTGAAGCTCAGGAAGCTGAAGTGCATCATCATCTCT
CCCAACTGTGAGAAGACCCAGTCTAAAGGTGGGCTGGACGACACGCTGCACACCATCATCGACTGCGCCT
GCGAGCAGAACATCCCCTTCGTGTTTGCACTCAATCGCAAGGCTCTGGGGCGGAGCCTGAATAAAGCTGT
TCCTGTCAGCATTGTAGGGATCTTCAGCTACGATGGGGCCCAGGACCAGTTCCACAAGATGGTTGAGCTG
ACCATGGCAGCCCGTCAGGCATACAAGACCATGTTGGAGACAATGCGGCAGGAACAGGCAGGAGAACCTG
GACCTCAGTCCCCTCCCAGCCCACCCATGCAAGACCCCATCCCATCCACGGAAGAAGGCACCCTCCCTTC
CACTGGAGAAGAGCCACACTACATTGAGATTTGGAAAAAGCACCTGGAAGCGTACAGTCAGCGTGCCCTG
GAGCTGGAAGACTCACTGGAGGCGTCAACCTCTCAGATGATGAACTTGAATTTATAA

Translation (858 aa):
MASERPREPDGEDSIKLSADVKPFVPKFAGLNVAWSESSETRVFPGCAATYYPFVQEPPAAEQKMYPEDM
AFGAPTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCPPPQEA
KGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPARGSSHLSSRTESSLKSDGYHKRPDRKSRILAKSA
STSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEGKMVKSDHTDG
AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSNP
SYNREKRVYPAPKAKASQGGELEQNESSKKNKKKKEKSKPSYEVLTVQEPPRIEDAEEFPNLSVASERRH
RGQSPKLHSKQQTQNEFKTSGKKSQVPVQLDLGGMLAALEKQQQQQHASHAKPSSRPVVFSVGAVPVLSK
DASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERMQQRLQESAVSLTV
ASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIH
SRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIIS
PNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHKMVEL
TMAARQAYKTMLETMRQEQAGEPGPQSPPSPPMQDPIPSTEEGTLPSTGEEPHYIEIWKKHLEAYSQRAL
ELEDSLEASTSQMMNLNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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