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Report for CCDS24660.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24660.2 Public Mus musculus 11 Sec24a 23 108 98 CCDS HistoryNCBI Gene:77371Re-query CCDS DB by CCDS ID:24660.2Re-query CCDS DB by GeneID:77371See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24660.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109097.8 ENSMUSP00000104725.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109097.8Link to Ensembl Protein Viewer:ENSMUSP00000104725.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109097Re-query CCDS DB by Protein ID:ENSMUSP00000104725
Original member Current member NCBI NM_175255.3 NP_780464.2 Accepted alive Link to Nucleotide Sequence:NM_175255.3Link to Protein Sequence:NP_780464.2Re-query CCDS DB by Nucleotide ID:NM_175255Re-query CCDS DB by Protein ID:NP_780464Link to BLAST:NP_780464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780464.2 1090 Q3U2P1-1 1090 100% 0 0

Chromosomal Locations for CCDS 24660.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51695127 51695241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51696649 51696752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51700814 51700906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51701158 51701262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51704276 51704413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51707128 51707303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51708935 51709045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51712189 51712362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51713531 51713689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51715125 51715245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51716439 51716645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51717724 51717779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51721815 51721933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51723584 51723696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51726485 51726594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51729452 51729578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51731803 51731905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733392 51733564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51733770 51733927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51734584 51734661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51736351 51736521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51743536 51744000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51756077 51756173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3273 nt):
ATGGCCCAGCCCCGGATCCCCGCTGCCCGCGGTGCCGCAGCTAGCCTCCAGGCCCAGAACGGAGCCGCCT
CA
GCCTCGGGGTCTCCCTACACCAACGGTCCTGTCCACAATACACTGATGTCTCCACAAGTGTCATCGAG
T
CAAGGCTATGATTCGCAACCTCCAGGATCCTACCCTCGTCCAATGCCAGCAAAGACTTTGAATCCATTC
TCT
GCACAGTCGAACTACGGTGGTTCTCAGGGATCTGGGCAGACTCTTAATAGTCCACTTGTGACTTCCG
GT
CCAGTACTACCTTCACTTCATAGTGGTCCTGTTCCCCGAATGCCACTACCTACTTCTCAGAACCCAGC
T
GCTACACCAATGCCTTCTGGTAGCTTTCTTCCTGGAGCCAACCCACCCCCACCTTTGAATTGGCAATAT
AAC
TATCCATCCACAGGACCGCAGACTAACCATTTTCCTCATGTAGCTCCACCAACTCTACCTGGGAATC
CA
AATTTAACAGCGGATCATCAATATGTTTCTTCTGGAGACCCTGCACTTCAAACCAGCTTCAAAAAGCC
A
GGTTCTGCACTTCCCTTACAGAACCCACCTCTGCCCCCCACTTTTCAGCCAGGAGCTCCTCCTGGGCCC
CCT
CCAGCTGGAGGCCCACCTCCCAGCCGGGGCCCCGCGCCCCAGAAAACACCTCCTCGGGCTGCACCCC
CA
CCTTCATTTAACTCAGCTGTCAATCAGGAAGGTATTACGTCAAATGCCAATAATGGATCTACGGCGGC
T
CATAATACTTATGATGAGATTGAAGGAGGTGGCTTCTTGGCAACACCACAGCTTGTTAATCAGAACCCC
AAA
ACAAGCCGAAGTGTGGGCTCTGCATACCCCTCCCTGCCACCAGGCTACCAGAACAGCGCACCACCTG
TG
GCTGGGATGCCACCACCCTCCCTCAGTTACCCAAGTGGCCCCCAGGCCTTTACTCAGACTCCCTTAGG
T
GCTAATCATTTAACTGCAAGCATGAGTGGATTAAGTCTGCATCCAGAGGGACTAAGAGTTGTCAATCTT
CTT
CAAGAAAGGAACATGCTTCCTTCCACACCACTGCAGCCTCCAGTCCCAAATCTGCTTGAAGACATCC
AG
AAACTCAACTGTAACCCAGAGTTGTTCCGATGCACGCTGACGAGTGTCCCTCAGACTCAGGCCTTACT
G
AATAAAGCCAAGCTTCCTCTGGGGCTGCTGCTCCACCCCTTCAAGGACCTAGTGCAGTTGCCCGTGGTC
ACC
TCCAGCACAATTGTGAGATGCCGTTCATGCAGGACTTACATTAACCCTTTCGTCAACTTCCTTGATC
AA
AGAAGGTGGAAATGTAACTTATGTTATCGAGTCAATGATGTTCCTGAAGAATTCATGTACAACCCTTT
A
ACCAGAGTTTATGGAGAACCTCACAAAAGACCTGAAGTCCAGAATGCTACTATTGAGTTTATGGCTCCT
TCA
GAATACATGTTACGACCACCACAACCTCCAGTGTACCTCTTTGTATTTGATGTATCTCACAACGCAA
TA
GAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCTGGATCTGCTTCCTGGCAACAC
T
AGGACAAAAATCGGTTTCATAACATTTGATAGCACTATCCATTTCTACAGTCTTCAGGAAGGTCTCTCC
CAG
CCTCAGATGCTAATAGTTTCAGATATTGACGATGTTTTTATCCCTATGCCAGAGAACTTACTAGTAA
AC
TTAAATGAAAGTAAAGAGCTTGTTCAAGATTTACTGAAAACGCTGCCACAAATGTTTACGAAGACGCT
G
GAGACCCAGAGTGCCTTGGGTCCTGCACTTCAGGCTGCATTCAAGCTGATATCACCAACTGGTGGTCGA
ATG
TCTGTCTTCCAAACACAACTCCCAACGCTTGGTGTAGGAGCTCTGAAACCACGAGAGGAACCCAACC
AA
AGGTCATCTGCTAAGGAAATACATCTGACACCATCCACTGACTTCTATAAGAAATTAGCCTTGGACTG
T
TCTGGGCAGCAAGCAGCTGTTGACTTATTCCTTCTCAGTGGACAGTATTCTGATTTGGCTTCCCTAGGC
TGC
ATCTCTCGGTACTCAGCGGGTAGTGTGTATTACTATCCCTCGTACCATCACCAGCACAACCCAGTGC
AA
GTACAGAAACTACAGAAGGAACTACACAGGTACCTCACTCGGAAGATTGGATTTGAGGCAGTCATGAG
G
ATCCGGTGCACCAAAGGTCTTTCCATTCATACTTTCCATGGGAACTTCTTCGTCCGTTCTACAGACTTA
CTG
TCTCTTCCCAATGTCAACCCAGATGCTGGGTATGCGGTCCAGATGTCAGTAGAAGAGAGTCTCACTG
AC
ACTCAGCTGGTTTCCTTCCAGTCAGCACTCTTATATACATCAAGCAAAGGTGAAAGAAGAATCCGTGT
G
CATACTTTGTGTTTGCCGGTAGTTTCTACCCTGAATGAAGTCTTTCTTGGAGCTGATGTGCAAGCAATT
TCA
GGGTTATTAGCCAATATGGCTGTTGACAGGTCGGTGACTGCCAGCCTGAGTGATGCCCGGGATGCTC
TG
GTGAACGCTGTCATCGACTCTCTCTCAGCTTACCGCTCTTCAGTCCTGAGTGGTCAGCAGCCAGGCCT
C
ATGGTTCCTTTCTCCTTGAGGCTTTTCCCACTTTTTGTGTTGGCTCTCCTAAAACAGAAATCTTTCCAG
ACT
GGGACAAGTATACGTCTAGATGAACGAATTTTTGCCATGTGTCAAGTGAAAAGCCAGCCATTGGTTC
AC
CTCATGCTCACAACACATCCCAGTTTGTACAGAGTTGACAACCTCTCAGATGAGGGAGCTCTCAACAT
C
AATGACAGAACCATACCTCAGCCCCCCATTCTTCAGCTCTCGGTGGAGAAGTTGAGCAGAGATGGAGCG
TTC
CTCATGGATGCAGGCTCATTACTGATGCTTTGGGTTGGAAGAAATTGTTCACAGAATTTTCTCAGCC
AA
GTTCTGGGAGTTCAAAACTATGCATCAATTCCACAGACAATGACAGATCTTCCAGAACTTGATACACC
A
GAATCTGCCAGAATAGCAGCGTTCATCTCATGGCTCAGAGAACAGAGGCCATTTTTCCCAGTACTCTAT
GTA
ATCAGGGAGGAGAGTCTTATGAAAGCAGCCTTCCTTCAGAGCTTGGTAGAAGACAGAACAGAGTCTG
CA
CTGTCATATTATGAATTCCTCCTGCACATACAGCAGCAAGTGAACAAGTGA


Translation (1090 aa):
MAQPRIPAARGAAASLQAQNGAASASGSPYTNGPVHNTLMSPQVSSSQGYDSQPPGSYPRPMPAKTLNPF
S
AQSNYGGSQGSGQTLNSPLVTSGPVLPSLHSGPVPRMPLPTSQNPAATPMPSGSFLPGANPPPPLNWQY
N
YPSTGPQTNHFPHVAPPTLPGNPNLTADHQYVSSGDPALQTSFKKP
GSALPLQNPPLPPTFQPGAPPGP
P
PAGGPPPSRGPAPQKTPPRAAPPPSFNSAVNQE
GITSNANNGSTAAHNTYDEIEGGGFLATPQLVNQNP
K
TSRSVGSAYPSLPPGYQNSAPPVAGMPPPSLSYPSGPQAFTQ
TPLGANHLTASMSGLSLHPEGLRVVNL
L
QERNMLPSTPLQPPVPNLLEDIQKLNCNP
ELFRCTLTSVPQTQALLNKAKLPLGLLLHPFKDLVQLPVV
T
SSTIVRCRSCRTYINPFVNFLDQRRWKCNLCYRVND
VPEEFMYNPLTRVYGEPHKRPEVQNATIEFMAP
S
EYM
LRPPQPPVYLFVFDVSHNAIETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLS
Q
PQMLIVSDID
DVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLISPTGGR
M
SVFQTQLPTLGVGALKPREEPNQRSSAK
EIHLTPSTDFYKKLALDCSGQQAAVDLFLLSGQYSDLASLG
C
ISRYSAGSVYYYPSYHHQHNPVQVQKLQKELHRYLTRKIGFEAVMRIRCTK
GLSIHTFHGNFFVRSTDL
L
SLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSK
GERRIRVHTLCLPVVSTLNEVFLGADVQAI
S
GLLANM
AVDRSVTASLSDARDALVNAVIDSLSAYRSSVLSGQQPGLMVPFSLRLFPLFVLALLKQKSFQ
T
GTSIRLDERIFAMCQVKSQPLVHLMLTTHPSLYRVDNLSDE
GALNINDRTIPQPPILQLSVEKLSRDGA
F
LMDAGS
LLMLWVGRNCSQNFLSQVLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLY
V
I
REESLMKAAFLQSLVEDRTESALSYYEFLLHIQQQVNK



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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