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Report for CCDS88119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88119.1 Public Mus musculus 10 Or10u3 23 108 98 CCDS HistoryNCBI Gene:258266Re-query CCDS DB by CCDS ID:88119.1Re-query CCDS DB by GeneID:258266See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000215871.2 ENSMUSP00000149253.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215871.2Link to Ensembl Protein Viewer:ENSMUSP00000149253.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215871Re-query CCDS DB by Protein ID:ENSMUSP00000149253
Original member Current member NCBI NM_146269.2 NP_666381.2 Accepted alive Link to Nucleotide Sequence:NM_146269.2Link to Protein Sequence:NP_666381.2Re-query CCDS DB by Nucleotide ID:NM_146269Re-query CCDS DB by Protein ID:NP_666381Link to BLAST:NP_666381.2

Chromosomal Locations for CCDS 88119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129974605 129975549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAAGAATGGAAGCCTGTCCCTCTGCACTGAATTCACATTGGTGGCCTTTTCTTCTCTAGCAGAGCTGC
AGCTTGTCCTCTTTGTTGTGTTCTTGGTTCTCTACTTGTTTACAGTGGGAGGAAACCTCACCATCATCTG
TGTGATCTGGACCACACCTTCTCTACACACGCCCATGTACTTCTTCCTGGCCAACCTCTCCTTCCTAGAG
ATGTGCTATATCAGCAGTGTGGTGCCTCAGATGCTGGTGCACCTGCTGGTACAGCTCAAGACCATAAGTG
TGGCAGGCTGTGCAGCTCAGATGTATGTATTCACCATCTTGGGGCTGACAGAGTGTTGCCTTCTGGCAAC
TATGGCTTATGATCGCTTTGTGGCTATTTGTTACCCACTACATTACACTCTGTGGATGGACCCTTCTGTC
TGTCTGAAGTTGGCTGGTGCATCTTGGATGACTGGGATCCTGGTAGAATCAGCCCAGACCACCTGGATCT
TCACTCTGCCCTTTTGTGGAGCAGGAACAATTCAACACTTTTTCTGTGACATCATGCCTGTGGTAAAATT
AGCTTGTGTGGATACTTCCCAGAATGAAATGGTGATATTTATTATTTCTCTTATCTTCATTATGAGTCCC
TGTCTCTTCATTCTATGCTCTTATGTCCGCATTATTCTGACCATCTTGAAAATGCCCTCAGCAGCAGGCA
GACACAAAGCTTTCTCCACCTGCTCCTCTCATATCCTGGTTGTTTCTCTTTTCTATGGCACTGCCTTATT
CACTTATCTCCAACCCAAGAGTTCACACACCCCAGACACAGACAAGGTTACTGCTCTCATGTACACTGTG
GTCACCCCTGCTCTGAATCCTGTTATCTATACGTTGAGGAACAAAGAAGTGAAAGAAGCCTTTCAAAAGG
TAACACAGAGGAAACTTCATAGACAAATAGACTAG

Translation (314 aa):
MKNGSLSLCTEFTLVAFSSLAELQLVLFVVFLVLYLFTVGGNLTIICVIWTTPSLHTPMYFFLANLSFLE
MCYISSVVPQMLVHLLVQLKTISVAGCAAQMYVFTILGLTECCLLATMAYDRFVAICYPLHYTLWMDPSV
CLKLAGASWMTGILVESAQTTWIFTLPFCGAGTIQHFFCDIMPVVKLACVDTSQNEMVIFIISLIFIMSP
CLFILCSYVRIILTILKMPSAAGRHKAFSTCSSHILVVSLFYGTALFTYLQPKSSHTPDTDKVTALMYTV
VTPALNPVIYTLRNKEVKEAFQKVTQRKLHRQID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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