NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40067.1 Public Mus musculus 7 Trim12a 23 108 98 CCDS HistoryNCBI Gene:76681Re-query CCDS DB by CCDS ID:40067.1Re-query CCDS DB by GeneID:76681See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106839.8 ENSMUSP00000102452.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106839.8Link to Ensembl Protein Viewer:ENSMUSP00000102452.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106839Re-query CCDS DB by Protein ID:ENSMUSP00000102452
Original member Current member NCBI NM_023835.2 NP_076324.2 Accepted alive Link to Nucleotide Sequence:NM_023835.2Link to Protein Sequence:NP_076324.2Re-query CCDS DB by Nucleotide ID:NM_023835Re-query CCDS DB by Protein ID:NP_076324Link to BLAST:NP_076324.2

Chromosomal Locations for CCDS 40067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104300837 104300862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104301094 104301191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104302241 104302263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104304156 104304386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104305999 104306094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104306912 104307331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCTTCACAATTCATGAAGAATTTAAAGGAGGAGGTGACCTGTCCTGTCTGTCTGAACCTGATGGTGA
AACCTGTGAGTGCAGATTGTGGTCACACCTTCTGCCAAGGCTGCATCACGTTGTACTTTGAATCCATCAA
ATGCGATAAGAAAGTGTTCATTTGCCCTGTGTGCCGAATTAGTTACCAGTTTAGCAATCTGAGGCCTAAT
CGAAATGTGGCCAACATAGTAGAGAGGCTCAAAATGTTCAAGCCCAGCCCAGAAGAGGAGCAGAAAGTGT
TTAACTGTGCAAGACATGGAAAGAAACTCCAGCTCTTCTGTAGGAAGGACATGATGGCCATCTGCTGGCT
TTGTGAGCGATCTCAGGAGCACCGTGGTCACAAAACAGCTCTCATTGAAGAGGTGGCCCAGGAGTACAAG
GAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAAAATTTGAAAACTGGAAAGATGACC
TTCAGAAGGATAGAACTTACTGGGAGAATCAAATACAGAAAGATGTGCAGAATGTTCGGTCAGAGTTTAA
ACGAATGAGGGATATCATGGACTCTGAGGAGAAGAAGGAATTGCAGAAGCTGAGGCAAGAGAAGGAAGAC
ATTCTCAACAACCTGGCAGAGTCTGAAAGTGAGCATGCTCAGCAGAGCAAGTTGCTAGAAGACTTCATCT
CAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTGCAGGGTGTGGAGAACATCATAGAACG
GAGTCATACTTTTTCGATGAAGAAGCCCAAAGCCATCGCCAGGGAACAAAGAAAGTTCCGAGCCCCTGAC
CTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCTCATCGCTACTAG

Translation (297 aa):
MASQFMKNLKEEVTCPVCLNLMVKPVSADCGHTFCQGCITLYFESIKCDKKVFICPVCRISYQFSNLRPN
RNVANIVERLKMFKPSPEEEQKVFNCARHGKKLQLFCRKDMMAICWLCERSQEHRGHKTALIEEVAQEYK
EQLQVVLQRLMADKKKFENWKDDLQKDRTYWENQIQKDVQNVRSEFKRMRDIMDSEEKKELQKLRQEKED
ILNNLAESESEHAQQSKLLEDFISDVEHQLQCSDIEILQGVENIIERSHTFSMKKPKAIAREQRKFRAPD
LQGMLQVLQEVTEAHRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH