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Report for CCDS3392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3392.1 Public Homo sapiens 4 MRFAP1L1 24 110 108 CCDS HistoryNCBI Gene:114932Re-query CCDS DB by CCDS ID:3392.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320848.7 ENSP00000318154.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320848.7Link to Ensembl Protein Viewer:ENSP00000318154.6Re-query CCDS DB by Nucleotide ID:ENST00000320848Re-query CCDS DB by Protein ID:ENSP00000318154
Original member Current member NCBI NM_203462.3 NP_982287.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203462.3Link to Protein Sequence:NP_982287.1Re-query CCDS DB by Nucleotide ID:NM_203462Re-query CCDS DB by Protein ID:NP_982287Link to BLAST:NP_982287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_982287.1 127 Q96HT8 127 100% 0 0

Chromosomal Locations for CCDS 3392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6709246 6709629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCGGCCCCTGGACATAGACGAGGTGGAAGCGCCTGAGGAAGTGGAGGTGCTGGAGCCCGAGGAGGATT
TCGAGCAGTTCCTGCTCCCGGTCATCAACGAGATGCGCGAGGACATCGCGTCTCTTATACGCGAGCACGG
GCGGGCGTACCTGCGGACCAGGAGCAAGCTGTGGGAGATGGACAATATGCTTATCCAGATCAAAACGCAG
GTGGAGGCCTCGGAGGAGAGCGCCCTCAATCACGTGCAGCACCCGAGTGGCGAAGCCGACGAGAGAGTGT
CGGAGTTGTGCGAGAAGGCTGAGGAGAAAGCCAAGGAGATTGCGAAGATGGCAGAGATGCTGGTCGAGCT
CGTCTGGCGAATAGAGAGAAGCGAGTCTTCTTGA

Translation (127 aa):
MRPLDIDEVEAPEEVEVLEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEMDNMLIQIKTQ
VEASEESALNHVQHPSGEADERVSELCEKAEEKAKEIAKMAEMLVELVWRIERSESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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